Protein Info for CA265_RS18830 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: DNA helicase UvrD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1072 PF13245: AAA_19" amino acids 3 to 55 (53 residues), 26.7 bits, see alignment 1.1e-09 PF00580: UvrD-helicase" amino acids 8 to 447 (440 residues), 127.2 bits, see alignment E=2e-40 PF13361: UvrD_C" amino acids 757 to 855 (99 residues), 30.7 bits, see alignment E=4.7e-11

Best Hits

KEGG orthology group: None (inferred from 70% identity to phe:Phep_4180)

Predicted SEED Role

"FIG003033: Helicase domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z8W7 at UniProt or InterPro

Protein Sequence (1072 amino acids)

>CA265_RS18830 DNA helicase UvrD (Pedobacter sp. GW460-11-11-14-LB5)
MPQPLKILQASAGSGKTFSLTAHYLTLLFSGDNKYREILAVTFTNKATEEMKTRILEVLL
GLAKGNPSKKIDDYRKLILQAYPTVSQQELQFKADKIYRKILHDYSRFSVSTIDGFVQKV
IRGFAFELGLNADYNLEMNYDKVKDDLVNKLDEALDHNKQLLQWIIDLAIERISDNKSWN
YKFELYNLIGEIFSERFQIFEDAVSTLGLENIDELFKKYISVTKAEIKNFEEELIALATE
ANEALNVIGVETEHLKGKSRSPLAKIIFVARGDFSKIEPLFNLIDEPEEWFQKNTNFPEA
YDTVNPILQKLKAHYLAHLPNYSLAIAFNKNLYYLRLMQEIAVLLKEYRAENDNLLISDA
QKLISGITEDAGDNPSFIWEKVGNRYRNFLFDEFQDTSTSQWGSFKSLLTNAMATPSQDL
IDHLIVGDTKQSIYRWRNGDWNILHKHAKLDVGAENVLEESLEENYRSAENIITFNNFLY
KAIPLTLQNELNENLATKPDSISKWWHEQHYQQIITDIYGGSTQNFATNTLKGGTIKIKK
FGKDHAPNEARFTETVFRDIALDDIVEEINHLKNEQQYALKDIAILVRSNSEALLTVKKL
MGHNLPVLSGDALLISNNSAIQLIINTLKVLIGLETQTALYKANCIALYHSLHDKEINAN
HYLNLNNKPLNTLTAVLPVALCENWQSWLQLPLPELVEILIESYGLKNLTANLPYLLAFR
DLTASAGKLGEKGIISFLTWWEEDGIKKSLPSPEGADAIQIITIHKSKGLAFRAVFVPFC
NWEIKGKPNGTFWVSSEETVYKELKGIPLKYNEALADSAIAKAYYEELLYNNMDALNMLY
VATTRSKDYLYIATMAKKELKLSNMGDVINFTFDEQFDENGVYEIVDDVIVESKVEEFNF
INLKSYPTTTRLSELYIPSEDKHLKHLVNIEKSGRKGSLLHDILASASTEKEVNDYSTNL
VLQGIIKEEEKQKLIDSALEVLNNPELQIILGKASESIVEKNIIDAHGKLHRPDRVLINA
DEVIILDYKFTLEESDKHIEQVNNYRVLLSEMGYQNIKTYLFYAVKGKLKLV