Protein Info for CA265_RS18625 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: LLM class flavin-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 TIGR03558: luciferase family oxidoreductase, group 1" amino acids 8 to 331 (324 residues), 376.8 bits, see alignment E=4.5e-117 PF00296: Bac_luciferase" amino acids 13 to 325 (313 residues), 83 bits, see alignment E=1.3e-27

Best Hits

Swiss-Prot: 48% identical to YWCH_BACSU: Uncharacterized protein YwcH (ywcH) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 55% identity to cpi:Cpin_4929)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z9J2 at UniProt or InterPro

Protein Sequence (335 amino acids)

>CA265_RS18625 LLM class flavin-dependent oxidoreductase (Pedobacter sp. GW460-11-11-14-LB5)
MSNTKIKLSVLDQSPVRKGVTARRAIEETTILAQETERLGYHRFWVSEHHNTTSLAGSTP
EILIAHLANHTKTLRIGSGGIMLPNHSALKVAESFRLLEVMHPNRIDLGMGRAPGTDRIT
ASLLNPSNNWSEQDFVEQLRELQHYLHDTSDGGIQAKIKAIPIAETIPQQWLLSSSGQSA
LFSAHFGMGFSFAHFINPHGGPQAVQYYREHFKPSVDLAKPVENVALFIFCSADEEKVKQ
QEALMAYRFLQLEKGGGLTSVGWNDIKDINYNAAEQERIKANKPRMIYGTPEVIKERLTK
LAADYDVDELMAVTITEHFEDRIKSYELLAEMFLS