Protein Info for CA265_RS18600 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 23 to 48 (26 residues), see Phobius details amino acids 169 to 189 (21 residues), see Phobius details amino acids 220 to 242 (23 residues), see Phobius details amino acids 366 to 387 (22 residues), see Phobius details PF03929: PepSY_TM" amino acids 23 to 389 (367 residues), 218 bits, see alignment E=1.3e-68

Best Hits

KEGG orthology group: None (inferred from 58% identity to shg:Sph21_3399)

Predicted SEED Role

"putative iron-regulated membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z8G1 at UniProt or InterPro

Protein Sequence (401 amino acids)

>CA265_RS18600 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MALTKTSTKSKNKKSRLRRISDWLHLWLGIASGLIVLMLGVTGCMYVFQKEITELIHRKA
YFVDVPSNPKTLPLSLLQTNAEKALGNKKKISFISTYKTPERAWEFGTYKAGDPKAFWYF
DSVDYYDLVLVNPYTGKVTLVADHKYEFFAVVKMIHWSLLINHPIGQQIIGWSTFIFVFL
LISGMVMWWPKNLKKSNFDKSFKVKWKAKFKRINYDMHNVLGFYVMLICLMLALTGLVWA
FQWFQGAVYVVASGSTTPPKVVEVKSDSTKSIKAVPFDIVFDQAKKIFKNEDRIGMSPAA
PGTATIYATGYRGEETYWNYDVIQFDQYSGKLLHRTNQSEKNGGETVIGMNYDIHVGAIL
GLTGKIMAFFASLIAASLPITGFIIWWGKGKKKKNTAVAEN