Protein Info for CA265_RS18160 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: short chain dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 PF00106: adh_short" amino acids 3 to 190 (188 residues), 159.8 bits, see alignment E=8.6e-51 PF08659: KR" amino acids 5 to 166 (162 residues), 40.6 bits, see alignment E=3.9e-14 PF13561: adh_short_C2" amino acids 9 to 227 (219 residues), 102 bits, see alignment E=6.1e-33

Best Hits

KEGG orthology group: None (inferred from 69% identity to phe:Phep_0379)

Predicted SEED Role

"putative oxidoreductase/dehydrogenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z8W9 at UniProt or InterPro

Protein Sequence (260 amino acids)

>CA265_RS18160 short chain dehydrogenase (Pedobacter sp. GW460-11-11-14-LB5)
MSKIVWITGASSGIGEALVYEYFKGGNKLIISGRNRDELFRVKGNCQNSFNVHVLPFDLS
ETATLENKAADAIRIFGKIDLLINSGGVSQRSLSLETNLQTEQQIMDTNFWGTVVLSKAV
LPSMISNGGGQLVIISSLVGKFGTKFRSTYAASKHALHGYFDSLRSEVYDKNIDITIICP
GFIKTNVTYNALTGDGNPLNMMGDAHENAMTPAECAKQIVLAVSNKKEEVYIGGKETRAV
LLKRFFPKIFSKKVRTAKVN