Protein Info for CA265_RS18010 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: peptide transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 380 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 176 to 202 (27 residues), see Phobius details amino acids 210 to 231 (22 residues), see Phobius details amino acids 237 to 256 (20 residues), see Phobius details amino acids 291 to 316 (26 residues), see Phobius details amino acids 337 to 364 (28 residues), see Phobius details PF12911: OppC_N" amino acids 4 to 44 (41 residues), 38.2 bits, see alignment 1e-13 PF00528: BPD_transp_1" amino acids 192 to 372 (181 residues), 99 bits, see alignment E=2.8e-32

Best Hits

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z854 at UniProt or InterPro

Protein Sequence (380 amino acids)

>CA265_RS18010 peptide transporter (Pedobacter sp. GW460-11-11-14-LB5)
MDNSPSKKVWLKFKRNKFAFGGLVFILLLMVMGILGYLIMPDDSPNANVQTLQLNKKKPG
STFTFLIFSRNPKVEKLNFFERMLNGQTPTFKSIPITSYQIKDQAVFVQEYIGDDEKAKE
TRYELKDLCPSCVLPSKMGTPQALFEKNNIYKQTYILGTDIYGRDLLSRLILGIRVSLSV
GLMAVLISLFIGVSLGAIAGYFGGRVDAAISWFMNVVWSLPSLLLVIAISFALGKGFWQI
FIAVGLSTWVDVARLVRGQVMALKEVEFVEAARALGFSTSRTIIKHILPNIAGPILVVAS
SNFASAILLETGLSFLGFGAQPPMPSWGSMIKEHYGYIIMDAAYLAVLPGLAIMFTVYAF
NVLAIGLRDAFDVKGQNVTV