Protein Info for CA265_RS17775 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 199 transmembrane" amino acids 180 to 198 (19 residues), see Phobius details TIGR02985: RNA polymerase sigma-70 factor, Bacteroides expansion family 1" amino acids 22 to 180 (159 residues), 148.6 bits, see alignment E=1.8e-47 TIGR02937: RNA polymerase sigma factor, sigma-70 family" amino acids 23 to 180 (158 residues), 79.9 bits, see alignment E=1.7e-26 PF04542: Sigma70_r2" amino acids 30 to 92 (63 residues), 44 bits, see alignment E=3.1e-15 PF08281: Sigma70_r4_2" amino acids 129 to 175 (47 residues), 46.5 bits, see alignment 4.5e-16 PF04545: Sigma70_r4" amino acids 130 to 177 (48 residues), 25.8 bits, see alignment E=1.2e-09

Best Hits

KEGG orthology group: K03088, RNA polymerase sigma-70 factor, ECF subfamily (inferred from 34% identity to phe:Phep_3968)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z817 at UniProt or InterPro

Protein Sequence (199 amino acids)

>CA265_RS17775 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MAPGRIEDERKLIEKIVGGDEQAFSVLFFKYLPVLQIFATKFTKSDDAAEEIIQDSFLRV
WLNRDKLAEVDNVKAYLYKYVSNECLSYLRKKLKEDRVVDAFTAKQQNSHNSTVETINLN
EVTKIIAIAVEKLPDQRKNIYQLSRRDGKTIPEIAEILNISPNTVKNALVTALKSIRIQL
DQHGIVFIFPIVFFFLKIK