Protein Info for CA265_RS17760 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 484 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF14322: SusD-like_3" amino acids 21 to 223 (203 residues), 140.5 bits, see alignment E=8.1e-45 PF07980: SusD_RagB" amino acids 353 to 446 (94 residues), 27 bits, see alignment E=3.6e-10

Best Hits

KEGG orthology group: None (inferred from 65% identity to phe:Phep_0306)

Predicted SEED Role

"FIG00490098: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z804 at UniProt or InterPro

Protein Sequence (484 amino acids)

>CA265_RS17760 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKKYIIYSFITLAAFGSGCKKYLEVSPDQRTKLNTPEKVSELLVTAYPGGSYVMVAEAMS
DNPSFVSLTGLDKPENRDAYYWKDVQGTGQDTPNNYWNNCYEAIAAANQALDAIDKAPDP
QNYTHQRGEALVARAYAHFMLVTFFSKCYDSATAASDLGIPYVTTPETVVLRNYDRKTVA
YVYDQIEKDLLEGIPLIKDELYRVPAYHFTRKASYAFATRFYLFKKDYEKVITYANLAFP
SNNFATNVRPWFAYSAPTGGSTEIAQNMSSAANPGNLLLAETASWCARNYKTTVYSLSQN
RLNTIIAPLGISLTAYQRYSSSSTFYFIPKHYEHFVRTSINASTGVGYVMQTLLTSEEVL
LNRAEAYIMRDRLSDALVDMNTLISQRVAGYVASTHNFTDAKIKSFYTSRTSDAKQAYIF
ALLDLKRAEFVEEGMRWMDILRYKLPVSHLDPDGNTVELAADDLRKVWQLPSEVTLAGMQ
QNPR