Protein Info for CA265_RS17705 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 666 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF07676: PD40" amino acids 261 to 287 (27 residues), 12.7 bits, see alignment (E = 2e-05) amino acids 306 to 341 (36 residues), 27.2 bits, see alignment 5.9e-10 PF00691: OmpA" amino acids 553 to 645 (93 residues), 64.3 bits, see alignment E=2.1e-21

Best Hits

KEGG orthology group: None (inferred from 52% identity to phe:Phep_3744)

Predicted SEED Role

"Outer membrane lipoprotein omp16 precursor" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z7Z5 at UniProt or InterPro

Protein Sequence (666 amino acids)

>CA265_RS17705 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKKILLFLLVAFGSFANAQYVVNYKKVADTYFENKDYYAASTFYKKALKITGDSSQVILP
YGKERKSATDDKVIEDYEGSIFNLAESSRLYREFNEAEKYYGVAITFTNTRFRKALFYYA
ESLRANKKFNLAIDAFQQFIQKNPGDVLVKDAQKEIESCKFAIEEMRFPRMVQVKKMPAN
VNGLGSNYAPVKINNEFYFTSSRPVAVGSKKDMVKTDAGEVQVSTKTNPFINNLYSAKGE
LTAADVAVKKIDINFPKNVEIAAASFTPDGNTVYFTTWREKEKYAIYSAKKTGDKWSDPL
PVGLQVNSKDFNSSQPFVTSDGKFLLFSSDRSGGYGKFDLWYCAVREDGSLGQAVNFGPT
INTEDDERAPYYNPLTKKLLFSTDGRVGFGGLDFFESEGDLVNWSNPKNLGYPFNSSKDD
LYFTATDDKGTKGYISSDRESSCCLELFEVKKEFLSIAGLLTDCKTKLPLAGADVTLTNA
EGPQKITTGSDGIYRFKVDSKRPIKLLFAKDNYFAVTKNYPYEELAKADTLIYKDYCLSP
FKLGIPMALDNVYYEFNSAELTEPSKKVLDFLIPIMEDNPEMEIELGSHTDNIGTDEYNL
DLSNRRAKSCTDYLESKGIAAARMTSKGYGESMPIAPNEIVVKRKKKDNPEGRAKNRRTE
FKVTKK