Protein Info for CA265_RS16325 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: CsbD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 61 PF05532: CsbD" amino acids 6 to 54 (49 residues), 59.2 bits, see alignment E=1.5e-20

Best Hits

Swiss-Prot: 43% identical to YJBJ_ECOL6: UPF0337 protein YjbJ (yjbJ) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: None (inferred from 85% identity to psn:Pedsa_0275)

Predicted SEED Role

"UPF0337 protein yjbJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z7A2 at UniProt or InterPro

Protein Sequence (61 amino acids)

>CA265_RS16325 CsbD family protein (Pedobacter sp. GW460-11-11-14-LB5)
MDKLELKGKWNEIKGKVKQAYADLTDDDLKHEEGQDDELLGKLQQKTGKGRDELVKWINS
L