Protein Info for CA265_RS16210 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 PF01965: DJ-1_PfpI" amino acids 40 to 178 (139 residues), 40.6 bits, see alignment E=3.6e-14 PF12833: HTH_18" amino acids 239 to 317 (79 residues), 72.7 bits, see alignment E=3.8e-24 PF00165: HTH_AraC" amino acids 280 to 317 (38 residues), 29.6 bits, see alignment 8.6e-11

Best Hits

KEGG orthology group: None (inferred from 72% identity to hhy:Halhy_0142)

Predicted SEED Role

"transcriptional regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z7E6 at UniProt or InterPro

Protein Sequence (328 amino acids)

>CA265_RS16210 AraC family transcriptional regulator (Pedobacter sp. GW460-11-11-14-LB5)
MKHVSILIPETAVIEAIADPRYLFTAVNEFLQASGKLPLFKVELIGMTKEVRLNNSLFSV
HADKLLHEVDHTDLIFVPAISGNIGYAMEANQDLLPWIIKHHARGAEVASLCMGAFLLAA
TGLLDGRKCSTHWLFANQFREMFPEVELVDGSIITDAQGLYSSGGANSYWNLLLYLVEKH
TDRDTAILAAKYFAIDIDRESQLAFMMFQGQKGHEDAKIKKAQEFIDGNYQDRITVDQLA
DMLALGRRSFERRFKSATKNTVIEYIQRVKIEAAKRSFESSRKNITEVMFDVGYTDTKSF
RDVFKKITGLTPIEYRNKYHKAIPVLQV