Protein Info for CA265_RS16085 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 771 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF01103: Omp85" amino acids 570 to 746 (177 residues), 93.6 bits, see alignment E=1.8e-30

Best Hits

KEGG orthology group: None (inferred from 69% identity to phe:Phep_3472)

Predicted SEED Role

"surface antigen (D15)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z7T2 at UniProt or InterPro

Protein Sequence (771 amino acids)

>CA265_RS16085 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MRKLIRPLLFLLACLVWAACSSTKSLKPGQILYTGAEVKINPDSSGKIDNEKQIKTDLEA
KTRPRPNKSILGIKFKLGIYNLAGEPKKPKGFRNWLRRQGEAPVLLNDVKLKYNNDVLSS
YLISEGYLQANVTGDTVVKEKKGKAIYTAVTGQRYKINKINFPPDSGVLTKIINANKNKT
LLKVGDYYDIDTYKNERIRIDNDLKENGYFYFSPDYLIMQVDSTIGKNLVNVSVKVKDIA
PDAALKPYTIKNINIYPNYSLRRDTTLRKLKPLQYNDFNIYDDRNTFKPKLFDRLVFFQK
GEPYNRKDHNQSLNRMVNVGAFQDVRAEFLPVDSFRNNQLDLNIYLTPLKKNSLTFSVVG
TSKSNNFVGSEVKVTQTTRNLFRNAEQLDLSVSGGFETQTKGTSLGKNSLSLTAEGKLTF
PRFIVPFYKPNSTNAFIPKTIASLSYQMLNRGSEYTLHAVKGQYGYNFKENLYKEHNFNP
ISISYVSTSFPSDTTEKRIYEQNPLLRTTLESQFIIGSNYNFTYTNQMEDSRRNNTYFFG
GLETSGNVWGLFTPKDENGQRSIFNKALTQFIRVEADLRDYYKITRNLIWANRLNLGYGY
AYGNSTSLPFVKQFFAGGSNDIRAFPARTLGPGTYKVRDDALFADQGGDIKLMLNSELRF
KIVSVLYGALFVDAGNIWLRKEDLGEPGKPETARLGSGFKLKNAFNELAVGTGAGLRVDV
SIFVVRLDVAFPVRKPYLPEGQRWVFDDIAFGNKDWRKQNLIFNIGIGYPF