Protein Info for CA265_RS16080 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: DUF490 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1663 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details PF04357: TamB" amino acids 1186 to 1613 (428 residues), 231.3 bits, see alignment E=1.2e-72

Best Hits

KEGG orthology group: None (inferred from 62% identity to phe:Phep_3471)

Predicted SEED Role

"FIG00909014: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZCV2 at UniProt or InterPro

Protein Sequence (1663 amino acids)

>CA265_RS16080 DUF490 domain-containing protein (Pedobacter sp. GW460-11-11-14-LB5)
MNRYVRKSLKILLWVIASIIILVVGLALSLNIPAVQNFVKGKAINYLKNKTKTEVSLESI
KIALPKDVVLNKFYIEDRKGDTLLYAEKLAVDISLFKLLKNTVEVNNIELKNVRANVKRI
SPDTTFNFSFLVDAFASDQKKPEEKVKKDTTSTLKFSVDKVSFEDIGINYRDDVAGNDVK
LYLGAFKTKIKDFDLANQHYVIKELSLVNTSLRYLQQKPLVHLVQHITNSVDSSEKEQGK
LPLIEVQNFIFSKVKVNYDDQLSTTKAVADVNDLGLVNLKVDLTNSKYAVDDAHLNKSNI
LFAFKPVPSNDLKKVKDTVVPEKSPLGLIIKNISLADNNVQFDNLGAKPAAKGMDFNHLK
ITQLNLGAGDVAYSAAGIKANVKNGSLKEKSGFVLDQLRGDAVYNDKQIKLSNFILKTPN
TSIENATELNFTSMEDLTKHPERVKLNLSFKNTSIGLKDAGFFSDAIPANYRNEKIKLNA
DVNGYLNNLNIPKLQISGLKNTQIDISGKAKGLPDIKKTYLDLNIKKLHVTKGDILVAVP
KKSLPPTIELPNVIDAKGNFKGSMTDFNTNLNIQTDMGGAILLAGMKGPKGKESYKADIS
LNNFNVGRLLKMQPKLGRVSVKANVAGTGLDPKKINAKFNAKVISAYYNKYTYRNLNLAG
NYSNQNISIKSSMPDSNANFNLDAKVNLAGKYPAVKADLNLKQVNLQALNFSPTVLSAAG
LVKVDLATADADYLNGSVDITSLQLVKDKQKINVDTISIRAKSTATENELTLKSEILSAK
IDGKYQLTKVGDAIINEINKYYAFGTVAKVPDQRLRFFVQVYDSKLLKEFVPELTVFKQS
QFYGLIDTQKDSLQIKGNFPQVVYGDFKVDTTVLNINNDNNKLAYSLTVKSLQSPSIALF
NTEVSGDAANNNLGVNIFLRDRQLKNKYVIGGTFQSINKDFKFTLDPQKLLLDYQKWVVS
QDNYIQFGASGILVNQFQISNSGQSLSINSNPTEPNAPLAVAFKDFQLETLTKFAETDTT
LVGGRLNGTANVKDLAGTPKFEANLTIDQLRYQKDQLGTLRLAVNNNTENAFEVNVALTG
VHELRVNGFYYTAPESALDLTVNIDKIEMKNIESLSAGQLKNGTGTLTGALTVKGALTAP
KILGDLTFNNAGIKVAYVNSYFRMPNEKISFTNEGISFNNFTLIDSLNQKATINGKVYTT
DFKNYRFGLDIRMNNFRAINSTAADNDMIYGTVFLTSNIKVRGDLNQPDVNMNINVNKGT
KFFFALPSSDPAIIDQEGIVQFIDADAPPFNGQKALKVDSISKSPIKGLNLVADVKVDPE
AELNVVVDPSTGDNLKVRGNADLNVTMDPSGKISMTGRYEIVDGSYNLTLAVVKKEFKLV
KGSTIIWTGEPTSATANITALYEVNAAPIDLLNQPDLYEARTKLPFQVYLMIKGELLKPT
ISFKLDLPENERGALNGQVYTKLINVNRDESELNKQVLSLLALNRFIANNPFQSLAGGGG
GVSTLARSSVSKLLTEQLNNLTSDLIQGVDLNFGVNSSEDYSTGSMQQKTDLEVGLSKKL
LNDRLTVSVGSSFALEGPQAPGEKSTNIAGNVNVEYALSADGRYRLRAYRRNQNDMIVQG
QIVETGLGFTLVVDYNKFREIFQKKRIRRIRNIEQKAQDEKTN