Protein Info for CA265_RS15660 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 25 to 1100 (1076 residues), 526.9 bits, see alignment E=1.4e-161 PF13620: CarboxypepD_reg" amino acids 26 to 95 (70 residues), 42.5 bits, see alignment 1.4e-14 PF13715: CarbopepD_reg_2" amino acids 27 to 107 (81 residues), 61 bits, see alignment 1.8e-20 PF07715: Plug" amino acids 117 to 239 (123 residues), 66.4 bits, see alignment E=6e-22 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 215 to 245 (31 residues), 51.5 bits, see alignment (E = 6.8e-18) PF00593: TonB_dep_Rec" amino acids 425 to 800 (376 residues), 67.4 bits, see alignment E=4.7e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z7V7 at UniProt or InterPro

Protein Sequence (1100 amino acids)

>CA265_RS15660 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKKIYLTSLSILLLCMATISAFAQKTVSGTVTDNQGLPLAGVSVFLKGTTKGTSTSTEGK
YTLSVPSNSTIVFKYLGYLNKEVSVGDNNTINVTLLDDAKALGEVVVTGLGEERNTRNLG
YAMNNIKGDQIRAANTINPIAALQGLVPGMMVQPGTGGPQSSPKFQIRGASSLYGSENTP
LIVVDGVILSDDAMSPARAGDQDFGNVLKSINSDDIESISVLKGGSVTALYGSRAINGVL
LITTKKGFAQKGLGISFSHDETFDNAYALPDMQQEYGSGFTPRDFIKGANGMNQINSASY
GFSFGPKLDGSTILDIDGRQISNSILNNPLSLYETGRYVNSNISMQGGNEKTTFRFSYAN
NFTKGISPYNKLNRHTFNFRGTQRLGDAVVIDATASYSNVRGFNPQRISGDNSLIYGLTW
GYPTNFDLDYWKDNYIDPVNGGRSTVDPFTTNQLFFRLNKFSQIQNENNFRGTINAKTNF
TKWLQLETSASLNWYNTNKEDRELGQDPGFKGGYYGSGIRNVIDSRYRAGLNLNHKVNDF
DLFLQLGSEVVRSQSKGANYGTSGGLKVPAQYRLSNSINTPTVGEGTPNISQVFASYAQG
SIGYKNWLTLNLYARKEWNSTLVYSNGTGNYNYFYPGADLAWIFTDALKMPSVFSYGKLR
ASYVVTGGGTVVYRSNTGYYLKGSNYQAVNSNTANIEQYGFDSQTLGNPDLKPLRAFSKE
IGIELKMFKNRLGLDFTAYRKNTKNQIINLSVPSESGVQNRLINSGDVQDQGIEFILSGT
PIKTQSFSWDAFFNYTRNRNKIISLAPGVTTVQLEGGDGIRTIAKVGGEYSTLVAAYGYA
KYQARDANGNPIDNPNNGKRVISPAGTGGAFYTRASNYANGLESESTIGSTLPKFYGSIR
NVFTYKSLSLSALIDAKFGGYVFSDTYFYGSQTGNLKNTLFGRTVENGGTAYTEAGNQEI
GVVLDGVFADGTIINGVNVGGMSHQQAIDKGLRIPTITWRYYNNSNGWGNGIRERGAFKS
SWVAVRDITLSYDLPKAFVSKIKMNGVKVYASARNIGFLYNNAPDNLNVNDFTSTGAGGA
FLGGGTPYVRTFGLGINGSF