Protein Info for CA265_RS15635 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1151 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 25 to 1151 (1127 residues), 508.7 bits, see alignment E=4.2e-156 PF13620: CarboxypepD_reg" amino acids 26 to 94 (69 residues), 36.6 bits, see alignment 7.2e-13 PF13715: CarbopepD_reg_2" amino acids 27 to 106 (80 residues), 59.7 bits, see alignment 3.5e-20 PF07715: Plug" amino acids 117 to 253 (137 residues), 47.5 bits, see alignment E=3.6e-16 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 229 to 257 (29 residues), 54.6 bits, see alignment (E = 7.3e-19)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z6Y1 at UniProt or InterPro

Protein Sequence (1151 amino acids)

>CA265_RS15635 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKKMYLKCLSVFLLTFLTITAFAQKTITGTVVEASGPIPGVSVSIKGTTKATQTDAGGKF
SISAAEGNVLVFRSVGYVSKEITVGASSTVNVRLESSSNSLDEVQVTTAFGIKREKRALG
YSTQEVAGKDLIIGQAPTIAQGLMGKVAGLQISQSGGGVEGGSSRIVVRGNTSLTGDNRA
LIIVDGVALNNDPANVNGNNTSSVAGSTGADVSSNNDWGTGMNFINQDDIENITVLKGPA
AAALYGARGGNGVILITRKKGSNRPGLGIDYNYSYRHTNPYEIQNFQNEYGQGGVASMLT
ADNSKMFPTNGAGQRYQIGNGYNPTGTYLSNSFGTVPYPNGKLTDAYFSYPGSQSWGPRF
DNQPILNYDGVLRPYSAQPDNWKAFFPDGSVVSHNVAISGGSENATGRLSYTRNDTKANI
LNSNMQSNTFNLGSTLKVSKKLTAEVTASYVNFTRLNAPSVGSGYLGGVIYSMPRDYNPY
VDFDNTYGPNNTRKDVLTQSNFPAGSPAYPFSGGYLGNQYWNANNNNTVFNRNGLTGGMK
LMADLTDFLNITAQGGVDNSNDVTTVKNQPTDILGQANGAYKLAQAKNLSTNLQAFARLH
KDNLFGKEINASLTAGVERYYRNDYTSSNSTAGNFVKPFVFALNNGANPVPQPQETKYAK
QINSAFSFLNLSYKNYLFLEATARNDWSSTLANGSNSYFYPAANLSYVFTDGIKGMQNSL
PWLSFGKLKLSYAETGSDTDPYTIFNVLDVSTNNGQQAQSLPGTLKFEGVQPQRSRSYEG
GISLGFFKNRLNVDLTAYSMKTFNQILDNPLALSSGFNTVKINTGSLGNTGFEFIVSGSP
IKTKDFSWDVSVSGAHARTKVLALQDGVNTLTLGNFFGGNGISQRVTVGDYYGTLYGRDF
TYYNGQKVVMRAEGTDGQPMQYTVNGKTYYAGTQWVKTAGEVPIGNSQPFLTGGITNTFK
YKAFSLYVLADAKIGGDTFFGSYAAGMGSGNLEETLKERNGGGLPLVYPDGTTANTGVNF
GGVFVTRDAQGNVTSATPNNDVVNYQWYYQGTFSAWNHIGTPRSASVFKNSWMKLREVAL
TYQVPAKFIQKTKFIQNLSLSLVGRDLFYIFTTIPKGLNPEGVNSIGNMQGIEYDSLPKT
RSFGFTIRSSF