Protein Info for CA265_RS15330 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: YebC/PmpR family DNA-binding transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family" amino acids 2 to 240 (239 residues), 255.2 bits, see alignment E=3.4e-80 PF20772: TACO1_YebC_N" amino acids 4 to 73 (70 residues), 87.3 bits, see alignment E=7.8e-29 PF01709: Transcrip_reg" amino acids 79 to 240 (162 residues), 176.5 bits, see alignment E=3.4e-56

Best Hits

Swiss-Prot: 62% identical to Y835_FLAPJ: Probable transcriptional regulatory protein FP0835 (FP0835) from Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511)

KEGG orthology group: None (inferred from 95% identity to phe:Phep_3642)

Predicted SEED Role

"FIG000859: hypothetical protein YebC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z6V9 at UniProt or InterPro

Protein Sequence (242 amino acids)

>CA265_RS15330 YebC/PmpR family DNA-binding transcriptional regulator (Pedobacter sp. GW460-11-11-14-LB5)
MGRAFEFRKERKFKRWAKMAVQFTRIGKDIVMAVKESGPHPETNSRLRTAMQNAKAVNMP
KDRVEAAIKRASDKSMANYEEIVYEGYAPHGVAVLIETATDNTNRTVANVRSYFNKTDGS
LGKTGSLDFIFNRKSIFRFVPAEGLDLEELEFELIDAGLEELYVEADEEGNDIAVAQGAF
ENFGSLQKALEEKGIELKSSKLERIALSHHEVTEEQAADVMKLIDKLEEDDDVQAVYHNM
AE