Protein Info for CA265_RS15315 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: xylosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 580 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF04616: Glyco_hydro_43" amino acids 49 to 316 (268 residues), 62.2 bits, see alignment E=5.3e-21 PF00754: F5_F8_type_C" amino acids 356 to 471 (116 residues), 67.3 bits, see alignment E=1.5e-22

Best Hits

Predicted SEED Role

"Arabinan endo-1,5-alpha-L-arabinosidase A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z6W9 at UniProt or InterPro

Protein Sequence (580 amino acids)

>CA265_RS15315 xylosidase (Pedobacter sp. GW460-11-11-14-LB5)
MRKLITLIFLVCTISAFAQKQKTYCNPINVDYGYTPFESFTEWGKHRATADPVIVNYKGD
FYLFSTNQWGYWHSADMLNWKFHERKFLRPWNKTKDELCAPGVGIVGDTMVVFGSTYTKN
FTLWGSTDPKGNKWFPLVDSLEIGGWDPSFFTDDDGKFYMYNGSSNNYPMYGVELDRKTF
QPKGTRTPMYLLQSWRYGWQRFGEYMDDTFLDPFAEGAWMTKHNGKYYFQYGAPGTEFSG
YADGVVVGSKPLFYDSPSVPQSDPLSYKGGGFSRGAGHGATFQDNSKNYWHISTSIICVK
NTWERRMGIWPTGFDKDDVMWTNTAFGDYPLYLPAERKEGGPAGPGWMLINYKKPVTVSS
TLGSFNANNAVDESIKTYWSAKTANNGEWIQTDLGSLATVNAVQINYADQDAEFIGKQTG
IYHQYKILSSTDGKKWTTLVDKSQNKTDVPHDYIELQKPVKTRFIKMVNIHMPTGKFAIS
GLRVFGNGNGEKPTKVNNLIVLRTEKDKRSAYIKWQPVDRSFAYNLYYGTAPDKLYNCIM
IHDFNEYWFKAMDSQKAYYFAIEAINENGVSAKTEVKKVD