Protein Info for CA265_RS15250 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 transmembrane" amino acids 38 to 57 (20 residues), see Phobius details amino acids 179 to 199 (21 residues), see Phobius details amino acids 224 to 247 (24 residues), see Phobius details amino acids 256 to 281 (26 residues), see Phobius details amino acids 293 to 314 (22 residues), see Phobius details amino acids 346 to 366 (21 residues), see Phobius details PF12698: ABC2_membrane_3" amino acids 39 to 363 (325 residues), 98.1 bits, see alignment E=6e-32 PF01061: ABC2_membrane" amino acids 169 to 335 (167 residues), 85.4 bits, see alignment E=4.3e-28

Best Hits

KEGG orthology group: K09686, antibiotic transport system permease protein (inferred from 76% identity to phe:Phep_0703)

Predicted SEED Role

"FIG00908865: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZDG2 at UniProt or InterPro

Protein Sequence (369 amino acids)

>CA265_RS15250 ABC transporter permease (Pedobacter sp. GW460-11-11-14-LB5)
MHERNSNSPSGAVGYSNTTATLALAKASFRSIMRSPSAVVFTLAFPLIFILVFGFLGGGG
TRIDVGVTPGADLNNPVMGMLEKTGMIRLVKDKSKAEFDKLLEKGNVDAMIDVHRKVNSA
AYSVNVVYTSASRDKGGILKSVLNNVLYDKTLKPTVAEIKESTITGREYKTIDFILPGQL
GFSLLSTGVFGTAFVFLSLRQTLVIKRFFATPVKRSSIVIGEGIARIGFALIGALFIILI
GHFFFGFTLVHGALTVVNMLILATLGVIVFMGFGFIISGIAKNESMVPPISNIITLPQFL
LSGTFFSIEAFPSWLQPISRALPLTYLNDAMRKVAFEGLGLWDVKFQIMILLLWGIGIYA
VAVKVFKWE