Protein Info for CA265_RS15000 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: amino acid permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 491 transmembrane" amino acids 29 to 51 (23 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 103 to 127 (25 residues), see Phobius details amino acids 163 to 181 (19 residues), see Phobius details amino acids 188 to 213 (26 residues), see Phobius details amino acids 240 to 261 (22 residues), see Phobius details amino acids 276 to 298 (23 residues), see Phobius details amino acids 332 to 351 (20 residues), see Phobius details amino acids 380 to 399 (20 residues), see Phobius details amino acids 405 to 425 (21 residues), see Phobius details amino acids 438 to 457 (20 residues), see Phobius details amino acids 463 to 481 (19 residues), see Phobius details PF13520: AA_permease_2" amino acids 31 to 455 (425 residues), 180.5 bits, see alignment E=8.5e-57 PF00324: AA_permease" amino acids 34 to 465 (432 residues), 151.4 bits, see alignment E=5.3e-48 PF13906: AA_permease_C" amino acids 435 to 485 (51 residues), 42.5 bits, see alignment 8.5e-15

Best Hits

KEGG orthology group: K03294, basic amino acid/polyamine antiporter, APA family (inferred from 76% identity to fps:FP0224)

Predicted SEED Role

"Cationic amino acid transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z6K7 at UniProt or InterPro

Protein Sequence (491 amino acids)

>CA265_RS15000 amino acid permease (Pedobacter sp. GW460-11-11-14-LB5)
MGLFTKKPMHLLLEEAGDSGKGLKRTLSAGALVALGVGAIIGAGLFVRTAAAAAQNAGPS
VTIGFIIAAIGCALAGLCYAELSSSIPISGSAYTYTYATMGELMAWVIGWDLVLEYAVGA
ATVGIAWSEYLNKLLVEVLHTSPIPYEWCHSPFQSHPDGTVNGIMNLPALFIVGLLSLLL
IKGTSESAFVNGLIVITKVGIVILIIVLGWGFINESNHHPYIPAATTYVDHAGISHSFGG
FWGVIGAAGTVFFAFIGFDAVSTAAQETKNPKTAMPIGILGSLAVCTVLYILFAHVLTGI
APVEFFRTKGGEASVVAAISEYMTGYSWLSKLVTVAILAGFSSVILVMLLGQSRVFYSMS
KDGLLPKMFSDLHPKFKTPYKANLVILIIVGLFAAFIPGDVVGDMTSIGTLFAFMLVCVA
VIILRKTDPDLPRQFKTPWVPLIPILGVVACGLMILGLGWTNWLRLFGWLALGFIIYFGY
SKKNSHLKDVK