Protein Info for CA265_RS14990 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 94 to 117 (24 residues), see Phobius details amino acids 140 to 158 (19 residues), see Phobius details amino acids 172 to 192 (21 residues), see Phobius details amino acids 227 to 250 (24 residues), see Phobius details amino acids 271 to 290 (20 residues), see Phobius details amino acids 319 to 344 (26 residues), see Phobius details amino acids 372 to 389 (18 residues), see Phobius details amino acids 395 to 416 (22 residues), see Phobius details amino acids 428 to 450 (23 residues), see Phobius details amino acids 456 to 473 (18 residues), see Phobius details PF13520: AA_permease_2" amino acids 14 to 460 (447 residues), 203.5 bits, see alignment E=5.8e-64 PF00324: AA_permease" amino acids 19 to 454 (436 residues), 138 bits, see alignment E=4e-44

Best Hits

KEGG orthology group: K03294, basic amino acid/polyamine antiporter, APA family (inferred from 75% identity to fba:FIC_01443)

Predicted SEED Role

"amino acid permease-associated region"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z6P0 at UniProt or InterPro

Protein Sequence (480 amino acids)

>CA265_RS14990 amino acid transporter (Pedobacter sp. GW460-11-11-14-LB5)
MKIEKEDGPSKRKLSLFDATMLVMGSMIGSGIFIVSADIMRNLGSGYWLIVVWVITGVMT
VAAAISYGELSSMFPKAGGQYTYLKEIFGKMMGFLYGWGLFTVIQTGTIAAVAVAFGKFT
AYLIPALNDAAPIFQSGGYKITWIQILAIGVILLLTYINTKGVESGKILQNIFTGSKIVA
LIGLIILGFFLVKNSFWAENLGFGSSAFNNLKTDASGNFLKSGWESISGMTIMGGIAAAM
VGSVFSSVAWENVTFVSGEIENPKKNVVRSMVLGTSAVMILYLLVNFIYLNTLNRDSIAF
ALNDRVAVAASEQIFGSGIGTIVIALLVMISTFGCVNGIVLAGARVFQTMAKDGMFFKAA
LKNNKNGVPEKSLWMQGIWASALCLSGQYGNLLDMISFVIVLFYMITVFGVIYLRIKQPK
LERPYKTWLYPITPIIYLLIGAAFCILLLIYKQQYTWPGLVIVLLGVPVYFFINKKEQLD