Protein Info for CA265_RS14975 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: ammonia channel protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 468 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 41 to 63 (23 residues), see Phobius details amino acids 76 to 98 (23 residues), see Phobius details amino acids 134 to 157 (24 residues), see Phobius details amino acids 165 to 185 (21 residues), see Phobius details amino acids 199 to 221 (23 residues), see Phobius details amino acids 236 to 255 (20 residues), see Phobius details amino acids 266 to 288 (23 residues), see Phobius details amino acids 297 to 315 (19 residues), see Phobius details amino acids 321 to 341 (21 residues), see Phobius details amino acids 353 to 372 (20 residues), see Phobius details amino acids 392 to 414 (23 residues), see Phobius details TIGR00836: ammonium transporter" amino acids 40 to 442 (403 residues), 451.2 bits, see alignment E=1.7e-139 PF00909: Ammonium_transp" amino acids 42 to 442 (401 residues), 411.6 bits, see alignment E=1.6e-127

Best Hits

KEGG orthology group: K03320, ammonium transporter, Amt family (inferred from 70% identity to cpi:Cpin_0541)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z6Q9 at UniProt or InterPro

Protein Sequence (468 amino acids)

>CA265_RS14975 ammonia channel protein (Pedobacter sp. GW460-11-11-14-LB5)
MSKFSFKQYAPFAILMIVAIFALFIPLLPNFDEGKYSAPDIAFILIAAALVFLMTPGLAF
FYGGMVHRKNVLSTMIKSVVAAGVITVLWTVVGFSLAFGDTIGGFIGNPSTFLFFKGVNS
GAPHLQGGADLTIPLSLFAVFQLMFAIITPGLVVGAVAERIRFTSYILFIVLFAIFVYSP
LAHWTWHPQGFLFKMGVLDFAGGTVVHISAGMAALAGALVLKRRKSHLEHKEVPPANIPY
VLIGTGLLWFGWFGFNAGSALGANSLAVSAFLTTNTAAGAAGLSWMFFDVARGKKPSVLG
FCIGAVVGLVAITPGAGFVSISASIFIGAIAAVISNLVVSWKQKTSLDDTLDVFPCHGVG
GIVGMLLTGVFATKTVNAAGADGLFYGNPAFFITQLKGAVIVIIFSFVVSFVIFKLVNLI
NPIRVSEEEEELGLDASQHDEKYSQGTLLVEERAIYIERNSPLTEPIS