Protein Info for CA265_RS14910 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 TIGR03719: ATP-binding cassette protein, ChvD family" amino acids 5 to 558 (554 residues), 944.1 bits, see alignment E=2.4e-288 PF00005: ABC_tran" amino acids 24 to 198 (175 residues), 88.8 bits, see alignment E=1.4e-28 amino acids 347 to 480 (134 residues), 79.4 bits, see alignment E=1e-25 PF12848: ABC_tran_Xtn" amino acids 237 to 310 (74 residues), 44.6 bits, see alignment E=3.2e-15

Best Hits

Swiss-Prot: 61% identical to ETTA_HAEIN: Energy-dependent translational throttle protein EttA (ettA) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 93% identity to phe:Phep_1117)

Predicted SEED Role

"ABC transporter ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z7A8 at UniProt or InterPro

Protein Sequence (559 amino acids)

>CA265_RS14910 ABC transporter ATP-binding protein (Pedobacter sp. GW460-11-11-14-LB5)
MSDEKIIFSMAGVNKIYPPQKQVLKNIYLSFFYGAKIGVIGLNGSGKSSLLKIIAGLDKS
YQGEVVFSPGYSVGYLAQEPILDPEKTVREVVEEGVAEVTAILKEYEEVNEAFGLEENYS
DPDAMDKLMARQGELQDKIDALGAWEIDSKLERAMDALRCPDPDTKIGVLSGGERRRVAM
CRLLLQHPDVLLLDEPTNHLDAESIDWLEQFLQNYEGTVIAVTHDRYFLDNVAGWILELD
RGEGIPWKGNYSSWLDQKAKRLSQEEKTESKRQKTLERELEWVRMAPKARHAKSKARLAN
YDKLASEDGREREDKLELFIPAGPRLGNVVIEATNVTKAYGDKVLFDNLNFSLPPAGIVG
IIGPNGAGKTTLFRLITGQEEADAGTFRVGETVELGYVDQMHNDLDADKTVYENITDGLD
NIQLGTKAVNGRAYVSKFNFNGGDQQKKVGILSGGERNRVHLAITLKKGANVLLLDEPTN
DIDVNTLRALEEALENFGGCAVVISHDRWFLDRICTHILAFEGNSEVYFFEGNYSDYEEN
RKKRLGDVTPKRIRYKKLN