Protein Info for CA265_RS14850 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 698 transmembrane" amino acids 20 to 37 (18 residues), see Phobius details amino acids 48 to 65 (18 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 214 to 235 (22 residues), see Phobius details amino acids 311 to 329 (19 residues), see Phobius details PF05569: Peptidase_M56" amino acids 22 to 297 (276 residues), 128.1 bits, see alignment E=4.2e-41 PF01435: Peptidase_M48" amino acids 184 to 232 (49 residues), 24.4 bits, see alignment 2.4e-09

Best Hits

Predicted SEED Role

"Regulatory sensor-transducer, BlaR1/MecR1 family / TEA domain-containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z744 at UniProt or InterPro

Protein Sequence (698 amino acids)

>CA265_RS14850 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
METLLQQFIKAFGWSILNSLWQSAIIYGVLFIVMLSIPKLAAKHKHNLAFGAIILMFIGF
GYNFIHQLTLNINSQAPAINAQNIQIYQYFNNLPPSFSSKAEQYFPVVVIFYAIGILLQL
FVIVKGYGQLSKLKKESLSAVPDSWKAIFEQVTAHLKINKVTQFHLSSIVNVPLVIGYLK
PVVLFPLALVNQLDNDQVEAILIHELSHIRRNDFLLNLIKTAIETLLFYNPFVWMAGRFI
HIEREHACDDLVLKITGKPLNYAHALLKLELLKDKNSPAYALAATGKTQNLYQRIKRITN
MKTNYLNAKQQMAALTLGVACLFSIAWINPTEKKKETKKTPKIEVLSIIDHHDVKTMVCT
DTTKKRKIKIVTIDADGKKTEYNSVKDMPDSLRKDFYRDELFAGKNIYRLHADSSFRFKF
NDSSLLSKIHKEYNSPEAQAKWKKFGEEMAQKYNSPEAQAKWKKFGEDIAKQYNSPEAQA
KWKKFGEEMQKKMNSPEAQAKWKKMGEDMAKEFGSPEAQAKWKKMGEDMAAKVNSPEFRA
QIENIRAHALKSGEIARLSALSKLNSDSLFKGNRHMLTGPDGAVFYFDNNSKVKQTEEYK
KLKEKFDNEVKELKEKMEKKEKKEKVEGGNKGAQISPAVMLYNNQDFTSAVKALNTLNAV
VTYKKSDFTHADQLALKSYVQAANLKIVDDHTINISIK