Protein Info for CA265_RS14190 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1261 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF02278: Lyase_8" amino acids 383 to 652 (270 residues), 176 bits, see alignment E=1e-55 TIGR04131: gliding motility-associated C-terminal domain" amino acids 1174 to 1257 (84 residues), 61.5 bits, see alignment 3.3e-21 PF13585: CHU_C" amino acids 1174 to 1251 (78 residues), 78 bits, see alignment 4.8e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z6X5 at UniProt or InterPro

Protein Sequence (1261 amino acids)

>CA265_RS14190 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MLKFYKLLLLCGIFIFCSITAAAQTDISKVRNAYLSSYYFNYAYSNAVKAIPASHILSRI
DTDGSFKRTNRNSVQADLTDTIFKLLYVFERPDSTAYYQNEATKVKLYNAVNYWLNHYPG
FAWTGSAMAQPSSLGMILAKLNDNFQADAANPSYSGIISNIKTKAKQFLRYTWSNGASKS
TFNNPNLGNNPGATYDWQRMGNVGYRILGYTGIAAGCDDSTSMDTISTIISNQIPLQINK
TTLSSGIVGAAYDGTLFQHSASSTLGSQYQNTSYGSDYLRDLSRYAIWVKNSKWALTKSQ
QEAWGNIILNGMQWMAYKGNITGHNIAGRHNAVKGALGTQLTAMPSEFTSVADSTIAPYK
RVKALQTKLANSGYKTYQIDSTKYFWNSHIILNHSAKYFTAIRMLSKRTVGAESSDASGG
AGLMNFFVADGSTMLYRRGNEYDSARVGWNWRCIPGTTVKQKTGTLPLVAWSAGTESNND
IAGGVSDGNVSIGMFNLSRTHTYTKTKANKAYFAFKDALICVGNAVSDTDAAAGDIYTTL
NQTQRRTDTYYKINGGAEQTVALGSSVATSLDITSASWFWQDSVGYVILPKSTIATTAVL
RAETRSGNWYNLDKRNTNATVSVNIFQLSINHGTTGSGKDDSYRYVIVPSVSKTDLINFF
NAKILAADSTSLYINYNAANLISASYNGYTGVFFTGTGNAKATNLGADNLSVSADKPVAL
LLKRKPTGLDIHVSDVKNAFNTNNEIKLGFNRIFQNNSFTPVRANGPVQITPAADSSMVT
VNTAKVSDLYEGEPIQIKALKGISTIKSDSTVTLADSFVQDGTYATTNYGLNSYLAMSYG
SNGYTREAYLKFDMHGVKGNAINAKLRLYVTGAVSTQWNLHKVSNNSWTETGIIWNNKPA
ADAAVISGVAGASAVGYVYFDVTPLLNSLGTDSILSVKIDVPSNVGYIWSAVSSRQGSFP
PKILFTVDTAVSALAVKTAPVIADAFVKDGTFANNNFGSYTYMEVKSDGVSYRREGYLKF
DLHQVKGKVIGAKVKLYSLGASTTKWRLEKVNNNSWTESALKWANAPAADTLINVQDGTP
AAAFVAFDVTNQLQHMPSDSLLSLKITALTDAVFTSFSTKEGAAAYKPYIEYTVDTTQNI
ESLNMQAPLLMAKAPPKKMKLDENLTLEQTDQEIKVQNILTPNGDGVNDIWLIKNIEQYP
KNWVRVFSTNGKLVYSKTNYSNDWDGQYNGAPLAEGAYVYFIQIKPNTNLIKGTFSVLTA
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