Protein Info for CA265_RS14170 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: DNA repair protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 PF04002: RadC" amino acids 28 to 149 (122 residues), 125.2 bits, see alignment E=7.4e-41

Best Hits

KEGG orthology group: None (inferred from 51% identity to fjo:Fjoh_4387)

Predicted SEED Role

"DNA repair protein RadC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z663 at UniProt or InterPro

Protein Sequence (151 amino acids)

>CA265_RS14170 DNA repair protein (Pedobacter sp. GW460-11-11-14-LB5)
MENLSFKVAEIEISYHPAFKLAELPQVTSAQEAYRVLMERWEEGRIELLEEFKVILLNRR
GRVLGVVNISQGGLSGTLADPKVIFAVALKACASGVILAHNHPSGELSPSDADISLTRKL
KSGGDILEINVHDHLIVSRYGFYSFLDEGMM