Protein Info for CA265_RS14105 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1768 PF04851: ResIII" amino acids 82 to 287 (206 residues), 25.8 bits, see alignment E=1.9e-09 PF00270: DEAD" amino acids 84 to 289 (206 residues), 73.4 bits, see alignment E=3.8e-24 PF00271: Helicase_C" amino acids 970 to 1042 (73 residues), 49.2 bits, see alignment (E = 1.1e-16)

Best Hits

Predicted SEED Role

"Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z645 at UniProt or InterPro

Protein Sequence (1768 amino acids)

>CA265_RS14105 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MDILNFHKKLIGNYKDYIQSFLNIKDKDLNTFVEGEISSGKLWPEPLIQFNPTFEPGVEL
EELVVQGRIHQKMKDIFKGYRLHRHQQEAILLGVEDKEFVVTSGTGSGKSLTYIATIFNH
VLNMERTVDGRVQGIVVYPMNALINSQFQELQKFEISYLEGNVYEKINKDGKRPEDIIKE
LQELTPVRFPIRYKQYTGQEDETERDEIRKNPPHILLTNYMMLELMMTRGGKDSEIRGNI
LANMKYLVFDELHTYRGRQGSDVSVLIRRIKSAATQDRIICIGTSATMVSDDAISLYEQK
QAVANVATTIFGSAISVEQIVNEYLIRSISGIVPNSKELKEAAIAKIDFAKGGEYFEVHP
TAIWIEENIALLQKEERYVRRKPTTIAAISSLLAEVTDLPPSKTLKHLEELLEWANLLNS
NQGAEKRKNYLPYRIHQFIAQTGSVYSTLGDQQSRKFFMDAGLYAENKDVKVFPLVFSRS
SGHEFYCVRLEKSVQKIQPNEFYDVFDEESEGSSEEGYLFIQHEDDDELIWDLERDSNDL
PESWFQPVRKDGLARLKSDREKRLPKRIFFDKQGNFSSNENLGFEGWFIPAPLMLDPSSG
IIYESQSGEYMKVMKLGGEGRSTATTVLSFETILQLKAFDEPARQQKLLSFTDNRQDASL
QAGHFNDFIKVGQLRSAIAEALNRYNVLDYTNIAERIFDALSISQYQFAKYPADFPGPKK
ENEDAFKDFITYRVLQDLKRSWRVVLPNLEQCGLLKIGYKYVNESAADNSLWQSNKLLAS
MSAEEREEFLTQLFDFFRKAYALSFSMLDAGVIVQNAKRIKEKLRAPWTLDDNERLDLPV
FIRLEKLSSTSRGHASESGGAQSLLARYIKRTANAHEIKLPKRADYDELVYNLFDFLSIQ
GGWLSSKKLKAENGNMVNVYQLKADMILWQAGDGKSLAQDLVRVRSYKPIMLKPNQYFQR
FYRTDFHNLKPIEGREHTGQISNEKRKLREREFRSGEISALFCSPTMELGIDIADLSIVH
MRNVPPSPANYAQRSGRAGRSGQAALVMVYCSNFSAHDRHYFKHAADMVAGKVTAPRIDL
LNQDLLKSHLYASVLTRHALSDLKLSIGDIVDTSNVEILPMKDEILESIKLTSLEKQDIL
STFKKVVADSYFVHEVEKRKPAWFTDSWILQNIDGFELALDAALNRWRILYRTAQGQIKE
ATNIIENRVYADDHQKKKEAYRSLRQGERQRDLLLNKTGNSITDQSEFYPYRYLAAEGFL
PGYNFTRLPIRSFMENEDQGGEFISRPKFVALSEFGPRNVIYHDGAKYRIDRILLSESEL
KLQKAKIAPKSGYFLYNDQYGYEVDPIVNEPLVLDANKDVHTTLIEMGETRAYEMQRITC
QEEERTRKGYDIQTYFSVDGGFENTIKGLVKIGGEDLLHVHYIPACRIFKLNLKWRASRD
NGFTINLQNGYWQNKKQQEEHAHLDEVKNVKLFTSDTANAIYLQPVLALGLKGEGNGVIT
FMYALKGAIERYFQVEANEIGATVMGDINAPNILIYESAEGSLGVLSQIIDNPRVFNNLI
DEAYRLCFFKNDLEQEGELTPATYDDLLSYFNQSYHSQIDRNLIRDGLSLLKKTNLEILS
NNLFDNYEQQYNFLAKSADENSVTEQRFLRFLFNKGLKLPDQAQPLVKDMFVRPDFMYHP
NVLIFCDGTPHDNSVVVNDDKLKRETLKQAGYQVLVWRYDDDLAAFVARRPDIFKIVHAP
SPQKALDLNEIYLEAKSKYSQTLKKLGQ