Protein Info for CA265_RS14095 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 951 transmembrane" amino acids 375 to 391 (17 residues), see Phobius details PF04851: ResIII" amino acids 102 to 271 (170 residues), 34.7 bits, see alignment E=3.4e-12 PF00176: SNF2-rel_dom" amino acids 112 to 287 (176 residues), 50.8 bits, see alignment E=2.7e-17 PF00270: DEAD" amino acids 119 to 271 (153 residues), 33.4 bits, see alignment E=7.6e-12 PF00271: Helicase_C" amino acids 472 to 584 (113 residues), 61.2 bits, see alignment E=2.1e-20

Best Hits

Predicted SEED Role

"Type III restriction-modification system methylation subunit (EC 2.1.1.72)" in subsystem Restriction-Modification System (EC 2.1.1.72)

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.72

Use Curated BLAST to search for 2.1.1.72

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z697 at UniProt or InterPro

Protein Sequence (951 amino acids)

>CA265_RS14095 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MIFDFKPGSLVRLRNRPWIVMPSEDSDVFLVKPLGGTDDEITGIYKPLANQSDVPVSYNF
VKPSGADLGDFSSAKLLYNASRLSFRNAAGPFRSLGKLSFRPRSYQMVPLIMALRQKLTR
LLIADDVGIGKTIEALLIARELYERKEIKGFAVLCLPHLCDQWQDELKSKFGIQAVIIRS
GTVSALDRQLRAHENIFRAFPFQIISIDYIKAGNKRQVFIDHCPEFIIVDEAHSCAKPAG
ANQSQQLRYHLLHDLASKVDQHLVLLTATPHSGKQVEFQSLLGLLKSEFERHSIVDSDPA
MKKELASCFIQRRRSDVLQWMDERTVFPQRLSVDKDYQIGQAYGEVFNDILSYARELVLS
NAADSRKQRYSYWDALSLLRGVMSSPAAGISMLEKKARKRQLSEALDEFIDYPEGSENVL
DTDFSQDDNLPLQLNSVFEVSDPESRKLMRYAKRLLELSTLEGDSKAREAVAQVKQLLQN
GLNPIIFCRYIQTANYLGKICKEYFKGKNYKGLQIEIVTSELNDEMRREKIAEMNVATNR
LLIATDCLSEGINLQDGFNCLLHYDLPWNPNRLEQREGRIDRFGQRASMVEVILLYGSNN
PIDGVVLDVLLRKAKEIRKETGISIPFPENSASVMEAVTNAILLKPQVKIKQLSHQLSIF
EADEITAEKNKVAKAFEEAEKREMLSRSIFAQNSIAASEIEQDLKDVDEAIGDVKAVESF
VVEALRFMGVQLDVVNDGYNLHTTNLPIRLRLLVPDKILIKICFLSPTPFGYLYIGRNHP
LTEAIAQVIIHDALNGSQTNRASRTAVIITSAVAERTVLFQFRVRNVIMEQPSAKQIVAE
EMWLWGYKGSIEAGKYFDKDDALVLLMNAKATQNMALAEQLYWLEEEVNWMSNEEAFRAR
TDGVALQRANKLVESHAKFRKLVSGSKYKVVEPVLPMDVLGVYVLLPEISK