Protein Info for CA265_RS13970 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 807 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF01103: Omp85" amino acids 579 to 764 (186 residues), 84.1 bits, see alignment E=1.4e-27

Best Hits

KEGG orthology group: None (inferred from 59% identity to phe:Phep_1269)

Predicted SEED Role

"FIG00907552: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z6M4 at UniProt or InterPro

Protein Sequence (807 amino acids)

>CA265_RS13970 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKAYQNSINIKLKSTAILLFIIVLIQACSSTKYIADYQSIVKKVTIDSVDAKFEEQAYNY
VQKDIRPASKLSINVPLYNLFNTKDGRYKTSDIKPFGTPPAILDSTLVEISRTQIQKFLK
SKGYRQAEVTSAIKIADKKAEVIFSAKPGPAYFINKLSDSIPNASIKSLYESNKANVTHL
HKGMQYDEDSLTYEREQIYRIMKENGYFYFLRPYVNFDVYGAEANSKTNKIDLTLNVTDP
TEGSHKQFNIGYTHMIIAPNPDGFPDSVRYKLSKDTINGIVFTDFSKRYRRNPIVRYDFL
KQGELYDIRNENLTYDRLYELNIFKNVKIDYFRRDSTSNKVNAVIQLIPQKVMTNRVEGE
VPFNGGTVGFNISNTYTNNNLFRGAERFELQLKGGLQSRIGNGAKVFSDIYQRDFSISAS
VTVPRLMIPFYNPTLGGNGMPHTTFSSSYIYALQKDVSVRRIFINSITYDWVETKSKLHS
FTPLNFEYRFGNLDPNVDPNTVLNNLYYSTLLGRKDLTLGMKYTYTLNANKLNEFRSFVY
LRAGMDIAGNMLQGISKLTGAKNDPADNDPAKILGLPFNQYMRPEVDLRWYKHLGGERQF
VARLNAGVAYAYGNSVSTGIPFEKQFFAGGSSGVRAWQARTIGPGNYDRGLLRSDTLRRA
FYGLDQLGTMRIETNFEYRFTVAKKFFGATLKGAAFVDIGNVWNLRKGESILAATPDLDE
QTVFKLSKFAQQLAVGTGLGLRYDVQYFVFRFDVGLKLKDPQFMGSDQWVISKFFSGARD
FKNNYNLTHAPDTYRFLQYNFGIGMPF