Protein Info for CA265_RS13880 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: beta-ketoacyl synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1411 PF00109: ketoacyl-synt" amino acids 4 to 285 (282 residues), 187.9 bits, see alignment E=6.7e-59 PF02801: Ketoacyl-synt_C" amino acids 293 to 409 (117 residues), 130.7 bits, see alignment E=6.9e-42 PF16197: KAsynt_C_assoc" amino acids 414 to 465 (52 residues), 36.2 bits, see alignment (E = 1.8e-12) PF00698: Acyl_transf_1" amino acids 590 to 782 (193 residues), 43.8 bits, see alignment E=6e-15 PF01648: ACPS" amino acids 1318 to 1396 (79 residues), 47.9 bits, see alignment 3.3e-16

Best Hits

Predicted SEED Role

"modular polyketide synthase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z613 at UniProt or InterPro

Protein Sequence (1411 amino acids)

>CA265_RS13880 beta-ketoacyl synthase (Pedobacter sp. GW460-11-11-14-LB5)
MKKSDVAIIGMSCIFPGAKDMQTFWENIINRVDSTQEVPADRIDPVHFDKTVSGVDRFYC
NRGGFIPDHQFDPQRFGILPLAVEGTEPDHLLTLDLVHQALEDASVFEKKYALDKTGIII
GKGNYVGPGATRAIEIVRTGEQISSVLKDLMPQLTDAEIEKVKHEFQLRKGRFSADTAMG
LIPNLVASLVANRLNLGGLAFTLDAACASSLIAVDHGVQELNSGRCDMIIAGGVHLGQNA
AFWSIFSQLGALSKQEKIKPFDQNADGLIIGEGCGFVVLKRLEDAIRDQDKIYSVIKGVG
ISSDGSGTSVMSPSVKGQLKAITEAWKNAELESKNIGYLEAHGTGTPLGDKTEVETLKQF
FGQDADLPKAGIGSVKSNIGHAMPAAGIAGLIKSSLALYHGIIPPTLHCDEPVTQLAETR
FSAVQKAIDWNQSGLPKLAAVNAFGFGGINAHVVLTAYDTPKKDEVLVIARPSHEALIES
LENGDYNIGNGNFRLVLFNPNPERIKKALKIVAKNSPWRNKQDIWYTNAPLLANDGKIAF
VFPGLDGLTGGEIKSVADYFNIHIDENEKQDGLLSEALHILNKSSVLDQALKQLGIKSDM
NAGHSLGEWLAARSSELAEESSVMNLLNVLNPETFELKDSRFIAVGCGLDALQPIIESIP
DLYLSNDNCPQQVILCGSKIALDELVPILKVKQIFHQILPFQSGFHSPFVADKLGLILEG
MQDMQFRKTTTPLWSATTLETYPEGFEAIRQLSAEHLIKPVRFRELTEKLYAEGARVFIQ
VGSGGLVGFIDDTLRGKEISTISANVPIRSGITQLQRVLAALFVEGKEIGLNYLGNIKST
PPQKNKGIKLELGSPMIHNLQTLKGLTIKQPQPAQPKTFVEAKHPVLQAFNENVMEMINM
QSEMIELFENAAIQVDQPSNWAPAKPIKPVRQPFSKTLDVSLDNCPYLIDHSLLRQPKGW
PTVEDMDPVIPMTMIFEVFAEIANAQSPEEKVQKIMNMRVFQWMNVVKPFQETVTGEWKD
EQRVYLNLERFANAEVQLATHLNPAPARSFDIGKLLDIDRTSAQIYDAHMFHGPDYQGIK
KLIAVGEKGITGLIEASGGKGSLLDNAGQLFGLWLQLTLEKDRIAFPVKIQEIEFFGDMA
DQQGTFECTCVLTEINDEFATADIVMKRDGITWLIISGWQNRRLEIDEALWNVSMSPLHN
RLSEEVAPGVFLFGNAYSRVVSWDFILKRYFNQTEKKHHQNLLPNKRRTWMISRVAAKDA
VRNLLNTQKNQACYPITFEIYSDEHRKPYVKGGLTENIHISIAHKGTDAVGIARFNEPVG
IDIEHIEERSAGFFDLVFNDHEMALLESRDKIEWATRFWVAKEAYGKYLGKGLQGNPKAY
TVEEINGEELRINNITIKTIKHKNYIIGWTL