Protein Info for CA265_RS13875 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: erythronolide synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2346 transmembrane" amino acids 457 to 477 (21 residues), see Phobius details PF03060: NMO" amino acids 289 to 617 (329 residues), 42.6 bits, see alignment E=2.3e-14 PF00109: ketoacyl-synt" amino acids 646 to 910 (265 residues), 234.4 bits, see alignment E=7.3e-73 PF02801: Ketoacyl-synt_C" amino acids 918 to 1035 (118 residues), 115.9 bits, see alignment 5e-37 PF16197: KAsynt_C_assoc" amino acids 1061 to 1140 (80 residues), 34.4 bits, see alignment (E = 1.2e-11) PF00698: Acyl_transf_1" amino acids 1186 to 1462 (277 residues), 105.4 bits, see alignment E=1.9e-33 PF00550: PP-binding" amino acids 1663 to 1721 (59 residues), 22.2 bits, see alignment (E = 6.4e-08) amino acids 1772 to 1818 (47 residues), 20.9 bits, see alignment (E = 1.6e-07) PF08659: KR" amino acids 2075 to 2295 (221 residues), 116.4 bits, see alignment E=6.5e-37 PF00106: adh_short" amino acids 2154 to 2295 (142 residues), 44.6 bits, see alignment 5.3e-15 PF13561: adh_short_C2" amino acids 2163 to 2268 (106 residues), 32.6 bits, see alignment 2.9e-11

Best Hits

Predicted SEED Role

"modular polyketide synthase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZD54 at UniProt or InterPro

Protein Sequence (2346 amino acids)

>CA265_RS13875 erythronolide synthase (Pedobacter sp. GW460-11-11-14-LB5)
MNKHAIIGVTPFEIPDSRLVSNLQKADCFPVLSLGHCKNEAEKALQALLEAGISDFGVSI
NSAALASIDLPTQVSLIIAPYDFALKRKTSAKIIYQVYDLESALAAQENGADGIVVKGNE
GAGCVAYESSFVLFQRVIKEITSLPVWVQGGVGIHTAASLMAQGATGIILDSQLALFPEC
AVPEELKVICGKLSGTETKLIDKTRVLVRPNSPAVAEDIDYNDLQKYFKGYDLETNYLPM
GQDIALSIDLVSKYKKLDKLVFGIKEAIYGHLKQAKAINIIKADNSLAKDLNITYPIAQG
PMTRVSDVAPFANAVSEAGALSFIALSLLKGASAKNLIEETKKLAGEKTWGVGILGFAPQ
ELRDEQQDYILNAKPPVLLIAGGRPSQAKPFEKVGIKTFLHVPSASLLDMFLKEGAKRFV
FEGRECGGHVGPLSSMVLWEKQIERLLKEENPESISIFFAGGIHDAFSTAFISVMAAPLA
ARGMKIGVLMGTAYLYTKEAVSTGAILDKFQQEAMQANETVLLETAPGHETRCLNSSFAT
FFNEEKKKLQSEGMDKKEIWAKLETLNVGRLRIAAKGIERRGDKLVQINEAEQTDLGMYM
IGQVAPMHKRIMSLLDLHQNVADNNYSHILNATLSSPPKNKAKALDVAIVGMACIFPGAK
NLEEYWRNIILGKDSVTEVPDERWNKELYYNPDSTAGDMSHSKWGGFIPRIDFDPLEFGI
PPQSLAAIEPTQLLTLMVAKQAMQHAGYADGGVDNENVSVIIGAEGGNDLANSYSFRGFY
KQVFGEMPAELDAALPKTTEDSFPGILANVISGRITNRLNLGGRNYTVDAACASSLAAID
LACQELFLEKSDMVLAGGADLHNGINDYLMFSSTHALSKKGRCATFDAEADGIALGEGIA
MIVLKRYDDALRDGDTIYSIIKGVGGSSDGKSLGLTAPRKNGQVNALERAYSQAGITPSL
IGLVEAHGTGTVVGDKTEISALTDMLNQSGATAGQTHLGSVKTQIGHTKCAAGIAGLIKA
SLSVYHGIKPPTINLKTPNSFYNAKTSPFAFHTEAGLWMEEKRYAGVSAFGFGGTNFHAV
LESAQNTENKNSILKSWPSELFVFRGDTYEEAKSRVISVKNLLELNDQIELKDIAYSLAT
TDNKPVQLSIVANHAEDLVMKIDLVLSGVESKDTYLTQKQEGKVAFMFPGQGSQRVNMAR
DLFVVFPEMRKLLKAYPEYEKVLFPNTVFNDADLKAQKEQIKDTRMAQPLLGIVDLAIAN
FLRSLGIVPDMVAGHSYGELPALCFAGAFEEEALVHLSAERAKAILNAVENGDPGTMLAV
SAKQEDLAQYLGDIAAVYPVNFNAPTQCVIAGSTPAISQLAAVLKEAKISFRPLEVACAF
HSPLVAKSKQLYQEVLSGVNFNDLKIPVWSNTTAKEYPVEAAAVKERLTDHLIKPVLFVD
ELRDMYAAGARVFVEVGPGKVLSGLTKYCIGKDEVILHTEDQGQNKLSHLLGTLAGYMAT
GREIKLEKLFEGRSVKTIKLDELDIYKKSPAIWYVNGQHAVPSTGKLPANGASPITKPII
LMNTTATPTENQQVNGSAKDLMMQEYLHSMKMLIQAQRDVMLSFLGQAPAMPSQIINQPL
TSYQVPQPVRIENQIIAKQEVPQAQTIEVITPAIEQKDLKLVLLQIVSDKTGYPQEMLGM
EMDLEADLSIDSIKRVEIIGALRTELGGFSQLNLPEDKIMEELAGLKTLSSLINWITENT
EQPKAVSAAAVTSAPIIQSEQAKFSIDQLKSAILEVVSEKTGYPKEMLGMDLDLEADLSI
DSIKRMEIIASLKEKIGFGSQSEQADDLMEKLAAIKTLNALVNWIADVEAESSEVLTEAK
KLIEESIDDQTVKEKLSRLRFELTPAALTITEAAILKGQRFALTDDGGGQAIKIKKVLEK
HGAIADLVSFEDSLDGYQGLIILNMFEAQQKVGILDHFATIKKLNFDTVKWVYLIADTKQ
YFNDQSDISFLRNYQGYSGFFKSLDREYEHTKCRFISLETKMSPDEITNITLNEILNPDK
PSEIIYNDHKRHIMELVPHQLSTETDAHIHLDKDAVVMVLGGAQGITAELMIHFAKDYPC
KYILVGRSANPISSANEASASLKTKDEIRQYLIKQGEIKKPAEIEQETNRIYKNNQILRC
IATLEEGGSTVVYESLDLKDEEALTRLINQVYEDYGRIDGVVHGAGLLEDKLFHSKTSES
FGRVFDTKVTPLRVLAEQLRPETQFVILFSSIASVYGNRGQTDYAAANSVMDKYAWALKQ
KIQGKVMAINWGPWKGVGMVSPTLEKEYQRRGIALIPLQDGMETFLNELKYGKESQVLIM
AGNTWT