Protein Info for CA265_RS13750 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 548 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 78 to 101 (24 residues), see Phobius details amino acids 121 to 144 (24 residues), see Phobius details amino acids 156 to 176 (21 residues), see Phobius details amino acids 197 to 224 (28 residues), see Phobius details amino acids 232 to 256 (25 residues), see Phobius details amino acids 268 to 289 (22 residues), see Phobius details amino acids 305 to 323 (19 residues), see Phobius details amino acids 335 to 359 (25 residues), see Phobius details PF02683: DsbD" amino acids 85 to 278 (194 residues), 51 bits, see alignment E=3.6e-17 PF13899: Thioredoxin_7" amino acids 413 to 482 (70 residues), 48.6 bits, see alignment E=1.5e-16 PF03190: Thioredox_DsbH" amino acids 416 to 472 (57 residues), 28.4 bits, see alignment 3.1e-10 PF13098: Thioredoxin_2" amino acids 422 to 524 (103 residues), 32.1 bits, see alignment E=2.5e-11

Best Hits

KEGG orthology group: None (inferred from 70% identity to psn:Pedsa_3601)

Predicted SEED Role

"Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8)" in subsystem Biogenesis of c-type cytochromes or Periplasmic disulfide interchange (EC 1.8.1.8)

Isozymes

Compare fitness of predicted isozymes for: 1.8.1.8

Use Curated BLAST to search for 1.8.1.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z711 at UniProt or InterPro

Protein Sequence (548 amino acids)

>CA265_RS13750 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MISLKKICLGLLLGCAISLNGYAQDSTNTDDLTFTEIKPETADSTVKAVDSNLKTTVSTP
ATVQKTIAPQKEEHKTLWGIFIAGFVGGLAALLMPCIFPMLPLTVSFFTKGSEKGKAFRR
AALYGFFIILIYVVLGLLVTVIFGADALNSLSTNGIFNFFFFLLLVVFAASFLGAFEITL
PSSWVNKMDANSDKGGLAGLFFMAGTLALVSFSCTGPIIGTLLVQAATTGALLGPAIGMF
GFSLALAIPFALFALFPSAMNKLPKSGGWLNSVKVVLGFLELAFALKFLSNVDLAYHWEW
FDREIFLSLWIVIFGMMGIYLLGKLKFSHDSPLAFISVPRLFLATIVLAFTIYLIPGMWG
APLRSVSAFLPPQETQDFDLYTASLLAGKQTTNDGPHKYADKFHAPLKLNAYFDYNEGLA
AAKKLNKPVLIDFTGRACVNCRKMEANVWPDKEVYKMINDDYVLIQLYVDDKSELAPDDV
VISPEGRKLNTIGKKWSDLQARKFQSNSQPFYVLLDPKTETLLAQPQGADFEVANYKKFL
ISGLNAFQ