Protein Info for CA265_RS13685 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 554 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF14322: SusD-like_3" amino acids 26 to 217 (192 residues), 55.4 bits, see alignment E=1e-18 PF07980: SusD_RagB" amino acids 287 to 554 (268 residues), 205.4 bits, see alignment E=1.6e-64

Best Hits

Predicted SEED Role

"Putative outer membrane protein, probably involved in nutrient binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z6U0 at UniProt or InterPro

Protein Sequence (554 amino acids)

>CA265_RS13685 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MITKMKKIYIITSVLLLSVIVSCKKDFLERPPLNQVSEATFWKNANDVYLAVNGVYSQLP
GDDMVYDDAAADNAHAQYPWESSATSVSSGNVNSTLNAGWDFTAIGRANYFLDNADKVTS
MDKALLDRYKAEVRFIRANAYFWLICKFGDVPLSTKTVELGRENLPRTPKAEVLKFVVDE
LDAIAKVLPQSYAGGKPNEKGRITKGAALALKARAHLYEGQWQLAADAASQVMTLGYDLY
KVTAEDALNAKDDYSVWVDFANADDEKKFRLGLRSYEALFHQVNEGNVEVILDRQRIPQQ
DANFLNTLLPSGDLGGWGSIAPTQELVNSYPSYKTGDLITPPSQAQRAAWYKAKDPAFKN
EYKNRDPRFYASILFDGNPWNAIEDDYSFKWTEGAGNTALTGYSVRKMVDPKIYRDQIDN
HANNILIRYAEVLLTYAEAKNELTGPDATVYDALDKIRTRAGMPVVDRTKYATQETLRAL
IRNERRIELAIEGQRYMDIRRWKIAPQVMKPIYSIADAAKPIQERTWNDKLYLMPIPQDQ
IDLSKGVLKQNSGY