Protein Info for CA265_RS13670 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 982 signal peptide" amino acids 1 to 48 (48 residues), see Phobius details PF02837: Glyco_hydro_2_N" amino acids 64 to 200 (137 residues), 70.7 bits, see alignment E=3e-23 PF00703: Glyco_hydro_2" amino acids 202 to 313 (112 residues), 67 bits, see alignment E=5e-22 PF02836: Glyco_hydro_2_C" amino acids 315 to 516 (202 residues), 136.9 bits, see alignment E=1.7e-43 PF02929: Bgal_small_N" amino acids 713 to 858 (146 residues), 32.3 bits, see alignment E=1.7e-11

Best Hits

Predicted SEED Role

"Beta-galactosidase (EC 3.2.1.23)" in subsystem Galactosylceramide and Sulfatide metabolism or Lactose and Galactose Uptake and Utilization or Lactose utilization (EC 3.2.1.23)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.23

Use Curated BLAST to search for 3.2.1.23

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZCK2 at UniProt or InterPro

Protein Sequence (982 amino acids)

>CA265_RS13670 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MSKLNFNTTIMTLNKIHGYQIRRKLLLTFALVTSTALTLLAQNSGIASTLSPIPSSLLSS
NKPVISLNGDWKFEQSNKKGNIKVPGEWVMQGYTVNTGETATYTKTFSIPNNWKGNRMKL
RFDGVSSHAVVKINGKKLAEHEGSFVPFEIDITDALKSGENLLQVDVQANTISDILACTS
QYAVHTVGGILRNVTLFALPEVNIADFTVVTTLDKNHNNATLNLKALVNNQGQKASAGQI
IYTLAAVTGKSIATVKAAVPAVSGQKSTLIHTDISVKNPIKWNTDKPYLYTLTTVLIIDG
KTTQSHQQKIGFRQVEVKGNQVFVNGMPIKLRGVNRHSVHPLTGRAISDDLELKDAELFK
QANCNYIRTSHYPPSERFLAIADSIGLFVENESSLTWIQHGASPIWKLWNYKDEKFYPYM
LAANIEKMQAGKNHASVIIWSLGNESYWSPLWDKVYREAKKIDPTRPISFHDQCWGGFNN
GGNKVDIANYHYPGINGPKATDTMKRPTLFGEYAHLSTYNRRELLTDPGVRASYGPSLVK
MYDSMYVHKGNLGGAIWSGIDDTFHLPDGNIVGYGPWGPIDAWRRPKPEYWGMKKAYAPV
VIKNVLQPIIKNGKLVLEIENRHDFISLSDVEITAQVDGVPVKLSSAIKPHGEGQLEIPV
KEATKEVYISFKDPSGNVVNEELMVLKPAEETMAHNKLSLSLTENEMAYFVTQGDVNYTI
NKITGVISGATNKGVKVLEQGPVFSVVAMNSEDGGKPNVAGETYQNNIHPIKNYPSYTIF
ANAIKVDQTNDAITFAIKTTYTTGDGDITYRFFANGNTQVDYEVKTTLERPYQYGMLFQL
PKTFDELSWKRKGEFTVYAAEDIARNSGTAKLNAKWLPGVEEFGKPAAKQWKDDSNEMGS
NDFRSTKQHILQTRLSNGSKEMVIQSNGKQASRSWLQDEKIQLLVADYWNNGSEPFYGSP
FTDGRINIKGKSLKGSVNFRLQ