Protein Info for CA265_RS13385 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1748 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF00754: F5_F8_type_C" amino acids 30 to 156 (127 residues), 30.6 bits, see alignment 1.3e-10 PF17291: M60-like_N" amino acids 368 to 481 (114 residues), 28.3 bits, see alignment 5.8e-10 PF13402: Peptidase_M60" amino acids 483 to 782 (300 residues), 97.2 bits, see alignment E=5e-31 PF17957: Big_7" amino acids 935 to 1003 (69 residues), 73.2 bits, see alignment (E = 9.1e-24) amino acids 1026 to 1092 (67 residues), 68 bits, see alignment (E = 3.9e-22) amino acids 1117 to 1185 (69 residues), 69.5 bits, see alignment (E = 1.3e-22) amino acids 1208 to 1276 (69 residues), 63.1 bits, see alignment (E = 1.3e-20) amino acids 1299 to 1367 (69 residues), 69 bits, see alignment (E = 1.9e-22) amino acids 1390 to 1455 (66 residues), 52.7 bits, see alignment (E = 2.3e-17) TIGR04183: Por secretion system C-terminal sorting domain" amino acids 1676 to 1747 (72 residues), 37.7 bits, see alignment (E = 8e-14) PF18962: Por_Secre_tail" amino acids 1676 to 1746 (71 residues), 32.2 bits, see alignment (E = 4.3e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z5U8 at UniProt or InterPro

Protein Sequence (1748 amino acids)

>CA265_RS13385 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKKRLLSFLAMLLLCAIANAQNPVTITAAASKRPSQGGSEITKAYDGNLTTMYHSNWSLN
AMPDTVDFYFVGVKSINKVDYTPRQSGPNGIWTTVDVYYATADAPSVFVSKLSNISWAQN
NTVKTIDMTASPIVKPYIVRFVIRAAGGNFSSCAEINFSSAETGPFVQPIDCDNPIAEDF
TAYTDVKLDIASASVSPASNGGEGIARTYDNNTTTLYHSNYTGGGFPISLTYNFTTNPSI
DYITYVPRQDGGSNGIFGTGEIWYKTTTQTTLTKLMDFDTGFSSAAYQISFPAALTNVTQ
IVVKVLTGKNNFASCAEMQFYQKNSAGNLYTNIFADELHTTLKAGITQTDIDAIASPFFK
SLAQCIFNNSYNKKYRLQTYDFYPNPGTVEGILKSNGLNRVENPTGIAFKANTKAIVFVG
DTYGVNPQLLVKDFGLDYSATTDSYPLKKGVNIINVLHDGLAYINYFSDKPNLQPIQINI
TTGQVNGYYNPLTDTNDQWTQMLLNGVYSKLDMKGTYVNLNLNKNILISNSAASGKALVA
AYDTIVHNEYTLNGLVKYNRVPKNHMFLRSITGDGNPNASGDGVNYPIGVGGSGSNLASA
TGVFKDPWGIAHEFGHNNQVRPGAKWIGTTEVTNNVNSAWIQYLYSSSYPSTTRLEKGND
VPKAGAASLYGGRYGSLFDNCLIQKKHMEAQGDVFVRLVPLWQLEVYYQLAGASKNLPTM
QQRLSGTPAPAGQPDVAFWYGDVLEKMRTTSQTGLNEGQLLLNFVSATCDAVQEDLTDFF
VKSGYLLPIDMDIDDYSIKRLTITQAQIDALIAAVQAKGYPKPVSPVLNYISANTINTFR
NKVPLATTAVATVGVTVNTNTLKIDNTKWANAVAFETYNQKVLTDVAIYGAGEATTANAT
TTVQYAAGSTSVYAIGYDGSRKLVYPAVDVANLLPTVAITSPVNNAVITAGADVAINANA
ADTDGTIAKVEFYQGSTLLGQSTTAPYSFTWTNPAAGTYALTAKATDNNGGTTVSDTVKV
IINTLPTVAISSPANHAVFTAGMNVTIDANATDTDGTISKVEFYQGNTLLGQSTTAPYGF
TWTNPAAGNYNLIAKATDNNGGTTISDTVKVIINTLPAIAISSPANNVVFTAGTNITIDA
TATDTDGTVTKVEFYQGSTLLGQSTSAPYSFSWANPASGNYSLTAKATDNNGGTTVSDTI
KVNVNTLPTVAISSPANQAAYTAGSDVVLNANAADTDGTITKVEFYEGSTLLGQSTTAPY
SFTWNNPGPRFYNITAKATDNNGGTAVADTVRIKINTLPTIAISSPADLAALTSGTDLTI
NANATDADGSVAKVEFYQGSTLLGQSTTAPYSFTWTNLPAGAYALTAKATDNNGGTILSA
IVNVTVSAAPTVSISAPINNATFTANSNISLNANTTGTIVKVEFYQGSTFLGQSTTAPFN
LVWNNVSAGMYTLTAKATDHLGRLATSSAVNVKVNAPQALTVNPVADAFVRDGIFAGVNN
GSAKSLDVSSENWSFFRESYLRFDYSTFSGSVVNSAKIRVYASRIDINPSRVVSVYGLSN
STWGENTITWNNKPSENGTLLGTYTVKNTAKAWYELDVTAYINSQLALGKKIISIRLINQ
AGKGFGNLVGFNSREATSNKPELLLNQEAVNFEESPINTNIGNAIGALLGLKITAWPNPS
TTGFKVQVESTSNEALQYRVYNIAQQLVKEAKTAATEQLTFGAELPTGVYMVEVRQGTER
KVVKVIKL