Protein Info for CA265_RS13295 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 829 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF13715: CarbopepD_reg_2" amino acids 43 to 107 (65 residues), 33.3 bits, see alignment 5.9e-12 PF13620: CarboxypepD_reg" amino acids 43 to 110 (68 residues), 49.9 bits, see alignment E=5.2e-17 PF14905: OMP_b-brl_3" amino acids 401 to 803 (403 residues), 361.3 bits, see alignment E=1.1e-111

Best Hits

Predicted SEED Role

"TonB-dependent receptor, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z6C0 at UniProt or InterPro

Protein Sequence (829 amino acids)

>CA265_RS13295 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MCKFLSFASGKKPDVSRLLSYIFPLVLCFLWSKPVCAQTDSAISGIVVMENGSPVEFASV
ALQDADGKGIKGTLTDSLGRFSFPALQHGSYRVKISNMGYITHHTDVIQISIQHRVIGLG
RLKLIEDAQTLNAVNISVQKKVIEQSIDKMTINVENSILSEGNTALELLQRVPGIKVDDE
GKISLKGRAGVNVMINGKLTYLSPAELSVLLKGTNSASVSKIELMANPSVKYDAAGNAGI
INIVMKKNQMKGLNGSLAVNGGLGRKARYGSGFNLNYKNAGFNVYGSYNYAYRGETEYLD
FSRRFYNNGHVAGNYDRISNQHTETNEPLNTNNFRVGMDVDLDPQNAIGFLVNGNIGKYL
HDSQTSNILQNQQGIIQSDMATTNYDQQHWSNLTYNLNYLHKFKKEARTFSADVDFASNS
FTSRLNLDTYSAPDVSAPAQTSNRKGYVPAKTDVYVGKVDYTDQLGKAIKIESGLKSSFI
TSDNNLVYQNLTDGAWVYDPAGSNYFKYKEQIHAAYLNLNREFKSFTLQLGLRGEYTHTL
GNQVTTGSLIKRNYFQLFPNLALNKTAGENNQFQLAYSRRVQRPDYGDLNPFRVFRDPLL
YYEGNPYLTPELTQNIVLSHIFKSKYTTALNYSRTTDVITWVSGQIDNLNTTYERPQNLK
SLVNYGVSFTGQTNYFSWWTATNFANIYNNIYRGGEDSGAFKNSQISFTINTQNSFKLGG
GYSAELNAYYHSKSVYGISTKKSYHSVSVAFQKNLLKDKASLKLLVNDIFQSSQYKQITR
YQNIDMYSHVNVDGRRVMLSFSYRFGNSFSTKERKRGNDDIQNRVKGGI