Protein Info for CA265_RS13005 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: peptidase M20

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 324 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF04389: Peptidase_M28" amino acids 99 to 294 (196 residues), 135.3 bits, see alignment E=2.3e-43

Best Hits

KEGG orthology group: None (inferred from 60% identity to phe:Phep_3007)

Predicted SEED Role

"peptidase M20/M25/M40 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z5K2 at UniProt or InterPro

Protein Sequence (324 amino acids)

>CA265_RS13005 peptidase M20 (Pedobacter sp. GW460-11-11-14-LB5)
MKILYILPLAMMLSCCSSVKNQNNTTSDKLDTQLLKDVEVLSSDAYQGRKTGTKGAEMAR
AYIIERFQKLGLKSYPQHVNYAQEFTFNGRGNAKINGTNIIGYIPGKGSNVIVVSAHYDH
LGVVKDEVFNGADDNASGTAGLLKIAAYFAKNKPNNTIIFASFDAEEMGLQGAKAFVGNP
PVPINTIAIDLNMDMISHSDKGELYVCGTFKYPDLKKYVDTTKTNIKLLFGHDDPKQGHD
DWTNQSDQGAFNAKNIPFLYFGVEDHKDYHKATDEYTTITKPFFSHAASAVLDVVKSIDK
QSGLQQLLKDKMIMTDNPKRSEKF