Protein Info for CA265_RS12725 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 178 PF03602: Cons_hypoth95" amino acids 1 to 175 (175 residues), 138.2 bits, see alignment E=1.3e-43 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD" amino acids 2 to 176 (175 residues), 120 bits, see alignment E=5.1e-39 PF06325: PrmA" amino acids 23 to 117 (95 residues), 25.5 bits, see alignment E=4.4e-09 PF05175: MTS" amino acids 25 to 154 (130 residues), 44.2 bits, see alignment E=8.2e-15 PF01728: FtsJ" amino acids 37 to 134 (98 residues), 28.2 bits, see alignment E=8.5e-10 PF01209: Ubie_methyltran" amino acids 42 to 155 (114 residues), 24.1 bits, see alignment E=1.1e-08 PF13847: Methyltransf_31" amino acids 43 to 153 (111 residues), 57.9 bits, see alignment E=5.1e-19 PF09445: Methyltransf_15" amino acids 46 to 121 (76 residues), 31.7 bits, see alignment E=5.4e-11 PF13649: Methyltransf_25" amino acids 47 to 143 (97 residues), 43.7 bits, see alignment E=1.9e-14 PF08241: Methyltransf_11" amino acids 48 to 146 (99 residues), 26.1 bits, see alignment E=5.4e-09

Best Hits

KEGG orthology group: None (inferred from 65% identity to phe:Phep_1467)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z5J5 at UniProt or InterPro

Protein Sequence (178 amino acids)

>CA265_RS12725 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD (Pedobacter sp. GW460-11-11-14-LB5)
MRIIGGKLKGIRLQPPANLPVRPTTDMAKEALFNILNNKYDFESCTVLDLFCGTGNLTFE
FASRGAESILAIDMDYGCVNWVKNTAKQHQFDQVDVRKGDVFKLLKQMTGAYDLIFADPP
YNMPNIPQIPVMVKEQQLLKPDGLLVVEHQSNMKLNSQPGYTETRKYGNSSFSFFEFS