Protein Info for CA265_RS12185 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 524 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF12741: SusD-like" amino acids 59 to 518 (460 residues), 515.4 bits, see alignment E=2e-158 PF12771: SusD-like_2" amino acids 64 to 486 (423 residues), 265.7 bits, see alignment E=7.4e-83

Best Hits

Predicted SEED Role

"FIG00937161: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z662 at UniProt or InterPro

Protein Sequence (524 amino acids)

>CA265_RS12185 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKNNSTRYILTTIVVLSTLFSCTKKFEDFNTPPLALSDEQSLRLVPSAIGPIEMGLLTGF
QISQNLSADAYAGYMMSPTNFEGGFNNLNYSLVSRWNDGPFTHQYNMVMAPIKKIAEAGA
RTTLPDVWGVALLIQVQAMHRVTDKFGPIPYTKTGTSFRVIPYDDQKTIYATFFKQIDTA
VNNMRTYLASNPPVKNRIGNNDFIYRGDLAKWIKFGNSLRLRLAMRLAKIDPATAKTQGE
LALSAPEGVLAANTDNAVLTSGKQNDYWLVTFAYNRDNMLNASFGTYLNGYNDPRATKMA
LPATQAGIAGKYSGIRLGADVTKGDYRTFTAFNYTDTYTQFAPHMEMNAAEMWFLKAEAA
LRGWTGAGDAKANYEKGIQTSMDQWGVSIGGYLSDATAKQEDYVDPINPVNNTSARSSIT
IKWDDAASQEQKLERIIVQKWLAIFPDGYEAWADYRRTGYPKLFPVARNFSNGTIDTETQ
IRRLPYAQSELLGNPEGVKTGLALLGGPDNGSTRVWWDKGGPNF