Protein Info for CA265_RS12070 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1044 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 39 to 1044 (1006 residues), 962.6 bits, see alignment E=3.2e-293 PF13620: CarboxypepD_reg" amino acids 40 to 110 (71 residues), 43.7 bits, see alignment 5.8e-15 PF13715: CarbopepD_reg_2" amino acids 41 to 122 (82 residues), 57.9 bits, see alignment 1.7e-19 PF07715: Plug" amino acids 130 to 235 (106 residues), 44.8 bits, see alignment E=3.1e-15 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 212 to 241 (30 residues), 53.8 bits, see alignment (E = 1.2e-18) PF00593: TonB_dep_Rec" amino acids 424 to 1008 (585 residues), 56.4 bits, see alignment E=1.1e-18

Best Hits

KEGG orthology group: None (inferred from 51% identity to cpi:Cpin_2722)

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z5L7 at UniProt or InterPro

Protein Sequence (1044 amino acids)

>CA265_RS12070 SusC/RagA family TonB-linked outer membrane protein (Pedobacter sp. GW460-11-11-14-LB5)
MNKTHKPYQKACKLVYLQNFFLSLVFVFVTLESFAQNTITVKGKITDETGIGMPSATVKV
KGTTTTAVSDNNGNYSIGVPDKTAVLVFSFVNYKTQEITVGEKTTILVKLESASNELEQV
VVVGYGTQKKTSLTAAVSTIKGDKVANLPVANLSNTFGGRAPGLIVTQGSGEPGQDGASL
LIRGIGTTGGTAPLVIVDGVPRTLGQLDPQSVENITFLKDAAAVAPYGVAGANGVILVTT
KRGNTGKPQLIYNGSYGIQNPTHLPEMVDAFEYVTMRNAAAKNAGTALPYSASDIEKFRT
GSDPDVFPNHDVLGELINKDAPMMSHNLSVTGGTEKVKYFGSLGYLSQNGMWGPTSFKRY
NLTSNVDAQVTNTTKFSLSLSGRVEDKRYPGKSASSIFDQLYRTPPIAPVTFSNGLPGSY
IGRSAYGNIYNSGYSNDLRQILTTQISIEQQLPFVKGLSIKGVVSYDYNDPNGRTVKTWL
TPIPYYSVNTSTTPYTYPQAGSDGPAKPSYTIDFAQSQAFTYQGFLNYNRTFGKHDFGAT
LVSEYRNTKGTTFGAGRSNFNVNIPELSNGSSELTDRSNYGSSSEGRQYGLVFRATYAYA
GKYLAEISGRYDGNYVFAPGSRYHLFPAGSIGWRLSEENYIKDNYKWIDNLKIRASYGES
GALPYIGGVLAPFQYLSAYALYGNSFIFNGGSTQGLSETAPGNPDITWETANKTNIGLDL
SIFKGLFDLEFNYFRENRSNMLIANQTLVPAEFGIGLPQTNAAAMQNRGFDLSLGSHYAF
KNGMRIGVTGNFTYAKNKLVQVFENASTLNNPNRSITGKSLGTKFGYHALGLFQQSDDKN
GDGTISSSEYPVAQFGTLKPGDIKYEDVNGDNKIDNNDIKVIGNSNVPQIIYGFSPEFSY
KGFDVNVLFQGGAKADAYINGQAAYPFFNGGSALKATLDYWTPENTNASYPRVLPSPSSN
STQTSDFWVRSGNYLRMKSATIGYTVPARIVSAIKLQSIRLYLSGQNLVTWTKDLKDFDP
EISASNANYYPQQKVYTFGLNVTF