Protein Info for CA265_RS11395 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: GntR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 PF00392: GntR" amino acids 29 to 82 (54 residues), 32.3 bits, see alignment 3.1e-12

Best Hits

KEGG orthology group: None (inferred from 65% identity to cpi:Cpin_5644)

Predicted SEED Role

"regulatory protein GntR, HTH"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z5G1 at UniProt or InterPro

Protein Sequence (338 amino acids)

>CA265_RS11395 GntR family transcriptional regulator (Pedobacter sp. GW460-11-11-14-LB5)
MITIFEKIQELEEIPSYSKHEQFVQGFINAIDERIISKGEALPSINVLIKELGFARETVM
KGYRELISRGIVESKKRLGYFVANDDTEQTLKVALLMYLIDSFQEQFYRNFRNELGPNVH
IDVFFHHGNITMFETMLDMIKGKYGVYVISPIPHPKTKHLLDSLPSNKLIMFDRYEALKG
EFNYVTQEFEHSTYQVLAELADTIKKFDEMIFFHVPGSLDPVEIIRAFKKFTKDFAVNTR
IINEYEPGSVEKGKVYFTLNNSEIWKILKDCEAKQLQVGKDIGILSHNDEVVKELIGGGI
TTYSADFSLMGKKVAQAVLKKEKIQEVIPTVLIRRNSL