Protein Info for CA265_RS11210 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: heparinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 894 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF16332: DUF4962" amino acids 30 to 504 (475 residues), 589.5 bits, see alignment E=4.4e-181 PF07940: Hepar_II_III" amino acids 549 to 715 (167 residues), 43.7 bits, see alignment E=2.6e-15

Best Hits

KEGG orthology group: None (inferred from 67% identity to phe:Phep_2833)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZD73 at UniProt or InterPro

Protein Sequence (894 amino acids)

>CA265_RS11210 heparinase (Pedobacter sp. GW460-11-11-14-LB5)
MKKIIILILSLFSLSSFAQQRPAVIKLTAEKLHARVREWPYPVNGITVPTNAPALMWPAT
NGKNIVTPMESGSEVPEDPAIGNVRYKVVLATDKDFKNNVITGAEQRWAVYPLHQALKPG
QWFWKYSYALKGSDKWIWSPVYHFVVDAKYANQKVAPPITEVLKRNEGQHPLLWGMHRIG
EDFYKNNLQNPEAKKFIVFATRLMDAPLPAEKPMRVIDTADKSTIEKKILETRMYHGFGD
FVGKPISNLCIAYQLSKDKRFILDAKRRALNIINMDPNAPATGSDFNNGVVLEALGWFYD
AGYDFLSPQEKEMFKKAITIRAKLVYDHLPNRFELHVSDNHVWQITMANLAIATVAVIND
VPEAKEWLTYLYEVWTARFPVLGTTDGGWHEANGYFMVNFRSIIYLSQMFGDFSGVNYFN
LPWMQNLPYYMLYTNPVGAGNTATGDMWEKYPTGGRGQAWFTDALTFKIDNPYLNWYVDE
AKKRNPKYFTGTDEYLLYRLLNYKPDRKLQVTSPANLPKTRKFADVGVVAMYQDLANPDK
SLSSFLLSNPFGSSGHGHASQNAFTINYKGKIIFGGAGYYSNFSDKHNLLNYRSTKSYNT
ILADSLNQKLGEEGYGWIPRAISGHHIQYALGDASNAYGDIKSEFWLNRFEQINLKPGKA
NGYGESGVTLYRRHMLQLDGGYIVLYDELEADKPVKWTTQFHTPYYTIKADQSGKANQQN
FTVTNDVGNVTASIFANSALKMNVHDQFYEQPLNWNKLTDADGKLIEYTNQWHAGITSLP
AQKFRYLTIIQIKDGKPEVIKTITAVNGLTHLKVGNWDIQAQLDGNKTAALQVFDKQLAS
LFNYGNLPVVYRNKAYRTQIKNSSLLLEMKGAQMNKQEVVDELPDVVKFDPESK