Protein Info for CA265_RS11155 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 662 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF17291: M60-like_N" amino acids 105 to 180 (76 residues), 54.3 bits, see alignment E=1.8e-18 PF13402: Peptidase_M60" amino acids 190 to 480 (291 residues), 119.7 bits, see alignment E=2.6e-38 PF00754: F5_F8_type_C" amino acids 530 to 656 (127 residues), 40.8 bits, see alignment E=3.4e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z5G3 at UniProt or InterPro

Protein Sequence (662 amino acids)

>CA265_RS11155 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKFQMKSILKLTILIGVVTLSACKKYGYEVEDGYDDNSGNNKSITVDTNRLFVDRSAFAK
ARVFPGLVGDGEPRVTDAKFTLNLNFSAQTADMLRISVAPQPQFGTGYYAPPGELIKIVV
PAGADGLSVQVGGHTDNLTGVSPLLRDPIIVVKKQLFAGVNYVRNLYGGYIYINATFSYP
NPIEFSISGACVTPDFELGKSNDAAWMAQVKASQVPWLELRCRSVVYLVPRDLIVEKFTS
SRDPLTNPTALMTKWNEIFDEHYNAWMGLSPNAADLRDRSPQGPWRGTVDIQISGFPTAA
GHSGFPFMGLLNYNGSEWFQTWVSLNQLTTNQPHPNWGTYHEFGHNCQQNTTWNWSALGE
STNNLFSYKVAKAYGQDFKILHAPNEWNDVALAYAATPPSATKNFDVDLNSGRENGSFAR
TVPFVQLLEKFDYGLLTYIYTKARHAPRLANNDQDKKDNFYEWACEYTKTDLIQFFGAWG
ITVSNVSQSKIKAANYPPLAKAIWTYNIMTGTGGDGPVPVVATTIPTTAVSASSPAQDGA
LANLVDNNTATIYHSKYSSPTPAESLPISIVVSTGATAAPVKGISFVQRIGQSNGYVRNV
EIYTSPDNVTYTLAGTTTVPQNETRYNYAFPGGTITTRYVKVIVRTGASTTFMSLSELTL
FK