Protein Info for CA265_RS10905 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: iron-dependent repressor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 PF01325: Fe_dep_repress" amino acids 5 to 60 (56 residues), 65 bits, see alignment E=1.2e-21 PF01047: MarR" amino acids 9 to 53 (45 residues), 26.4 bits, see alignment 1.1e-09 PF02742: Fe_dep_repr_C" amino acids 63 to 132 (70 residues), 107.1 bits, see alignment E=7.9e-35 PF04023: FeoA" amino acids 144 to 215 (72 residues), 52.4 bits, see alignment E=9.3e-18

Best Hits

KEGG orthology group: K03709, DtxR family transcriptional regulator, Mn-dependent transcriptional regulator (inferred from 74% identity to phe:Phep_1554)

Predicted SEED Role

"Mn-dependent transcriptional regulator MntR" in subsystem Transport of Manganese

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z5G8 at UniProt or InterPro

Protein Sequence (220 amino acids)

>CA265_RS10905 iron-dependent repressor (Pedobacter sp. GW460-11-11-14-LB5)
MQSYTEENYLKTIYHLAEKTTNVQTNAIAEQMQTKPASVTDMIKKLADKGLVDYIKYQGV
TLTETGKNTAIDIVRKHRLWEVFLVDKLNFKWDEVHDVAEELEHIKSIELIERLDEFLGF
PKADPHGDPIPDKNGRFAKTQFIKLIELKIGDRGTITGVTQHSSAFLKHLEKLGLTLGKQ
IQISDVTDFDGSVEIMLSDKQVNISREVAKHILISSNGKN