Protein Info for CA265_RS10545 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 PF00665: rve" amino acids 168 to 261 (94 residues), 41.7 bits, see alignment E=1.9e-14 PF13683: rve_3" amino acids 250 to 315 (66 residues), 75.1 bits, see alignment E=4.2e-25 PF13333: rve_2" amino acids 268 to 317 (50 residues), 36.5 bits, see alignment 6.4e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z576 at UniProt or InterPro

Protein Sequence (326 amino acids)

>CA265_RS10545 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MPINTNDFTVERKYLDTYRFMIREYELIKQKSHPEYRFVEDLYRAWGTNRKSFLKYYNRF
KQSGKDCDLLPRKRGPKYRTRRPFQFIENQVIELRQKGNSKHEIVRILKPKLHKFTPSAS
GVYNISKRYGLNRLNLRMKENKRKIIKERMGQLGHIDCHHLGKAILRGQSRKLYLVCLLD
DYSRLAWAEVTEDITSLTVMFATMRCINMLQSEYGIKFEEIISDNGPEFGQRQSQNKINQ
PFERMLIELDIKHRYTQPYRPQTNGKVERFWRTLKEDLIEETDFDSIEELHDELFQYMLY
YNQERPHQGIGGITPIEMAKNENQKK