Protein Info for CA265_RS10425 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 919 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF02837: Glyco_hydro_2_N" amino acids 53 to 182 (130 residues), 54.7 bits, see alignment E=2.5e-18 PF00703: Glyco_hydro_2" amino acids 190 to 284 (95 residues), 45.8 bits, see alignment E=1.9e-15 PF02836: Glyco_hydro_2_C" amino acids 289 to 414 (126 residues), 100.4 bits, see alignment E=2.2e-32 PF02929: Bgal_small_N" amino acids 725 to 836 (112 residues), 29.5 bits, see alignment E=1.2e-10

Best Hits

Predicted SEED Role

"Beta-galactosidase (EC 3.2.1.23)" in subsystem Galactosylceramide and Sulfatide metabolism or Lactose and Galactose Uptake and Utilization or Lactose utilization (EC 3.2.1.23)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.23

Use Curated BLAST to search for 3.2.1.23

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z507 at UniProt or InterPro

Protein Sequence (919 amino acids)

>CA265_RS10425 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MIKRLLPLLLLLVSYSIFSQETTKTYLSGTDKDHTKQWDFYCTAGRKSGIWTKIPVPSNW
ELQGFGSYNYGHDKVKANEQGIYRYEFPMGKITGKKVFLVFEGAMTDTKVSINGKLAGDL
HQGGFYRFKYDITSLVKPGEQNLLEVTVDKMSANTSINKAERTSDFWVFGGIFRPVYLET
VPDKFIERVAVNAKADGTFQLDVYGQNLAADDILEAQVKKINGENLGKAFAVKVNLEKGI
QTLNSTFSKPLLWSSEFPNLYQVVVRIRNKQQIIHQVKQKFGFRTLELRNGDGFYVNGAK
MILKGVNRHSFWPESGRTLSPEVHLMDVKLMKEMNMNAVRMSHYPPDAEFLDVCDSLGLY
VINELTGWQAKYDNTVGHRLVKELVIRDVNHPSIIFWANGNEGGFNTDLDNDYALYDPQK
RTVIHPWEKFNGTDTKHYPDYNYMVKAANSGQEVFFPTEFMHGLYDGGAGAALDDFWNQM
LIHPHGAGGFIWALVDENVIRTDKNGIYDGDGNHAPDGIVGPHREKEASFYTIKEIWSPV
FVDLPKIDKDFKGKIAMENRFSFTNLDQCTFKWKLVTFPLADDAGTKAMVKASGVATSKL
KPGEKGLLDLALPKSWAQSDALYLTAYGADKKEIFTWSWPINTAALIVDKQKTIVSNSGV
KAEETDQSIVIKQDDIAYYFEKSTGYLQKVLKGNTVISLSKGPVLAGVNTELKNFNHRAE
GAKYIVESDYQGAGGLHARWTFEPGKLAKLEYQFNQQGEADFMGITFNYPEDKTTGMKYL
GRGPYRAWKNRLKGQQFGVWHKDYNNSITGETWGYPEFKGYHAEVNWVTIENKEAPFTVY
IPDQDTYLQMFRPAREAAALSNNNVEPAFPEGSIGFLKGISAIGTKFQSALLLGPQSQKN
KADGKTFKGTLLFDFGHEH