Protein Info for CA265_RS10255 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 966 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 83 to 966 (884 residues), 682.6 bits, see alignment E=6.2e-209 PF07715: Plug" amino acids 96 to 189 (94 residues), 43.1 bits, see alignment E=2.7e-15

Best Hits

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z4X5 at UniProt or InterPro

Protein Sequence (966 amino acids)

>CA265_RS10255 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MSGTYTSIIKRMTLFGVLLFLANSVDVLAFPNLTNSSKKFQVPSPAKKNSKQIPNDSLSN
LRDSLRNKLRNSVALTLPDHDVPVLFGTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYG
KLPGLYVVQNNFQLGSDEPAISLRGRTPLVVIDGVPRSYLSIDPEQIESISVIKDALGTA
LYGMKAADGMLLITTKRGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALANDG
RQAIYTAADLDKYKNGTNPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLDY
LSQSGFLVTDPSINTYETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTIA
SIYSTLLTTPNNAYPKFNENGSLGGNTEFQNNLYGMSIKSGYRPSVNRNLGADVSLMQKL
DTFLPGLYASGAISFNSYYNENINRSKSFAVYSPVINPVTNQTSYKTIGGDGTQSNSSSP
TDLNQQIFSRFDLGYDKTIDKNTFKAQLLFIRDSYVLGGALSQVNQSLGGRFNYDYDNKY
LLELATSYMGYDRYKAGDQWGFFPSVGLGWNIASESFFANLKNTVNSLKLRTSYGLTATN
AAAGYFQYLQNFDNGDTFYSRNPLTTSSTKDEGPLANPNITWEKAKKFNIGLDVSMLKDK
VWLTADYYRNSYYDLLQTRRTNASAVIGAVLPPENIGKNQYSGIELGLGYQNQINNFRYF
ITANGSWSASKVIFNDEPFRKNAYEYRTGQPVGQTFGYVADGFYNNTAEINNGPKVDGYL
PVPGDLKYKDLNNDGIINTYDMTAIGSTKPVFFYGLTGGINYKGLDFSFTLNGKANRNVY
FNFINFASTGAAGGYGQALESSLLRWTPATASQAEYPRLSVGNNPNNSQVSSFWVKNGNY
LRLRNVEIGYSLPGHLIKLIGLTNVRVFANGLNLLTATTLDGVDPEVLIGNVPNQRIFNF
GVNLQF