Protein Info for CA265_RS09935 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 137 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 30 to 52 (23 residues), see Phobius details amino acids 64 to 82 (19 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 120 to 136 (17 residues), see Phobius details PF00892: EamA" amino acids 3 to 136 (134 residues), 70 bits, see alignment E=1.2e-23

Best Hits

KEGG orthology group: K08978, putative membrane protein (inferred from 62% identity to sth:STH2111)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z3X9 at UniProt or InterPro

Protein Sequence (137 amino acids)

>CA265_RS09935 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MWKFYAILSAVFAAATAILAKVGLKGVNGNIATAIRTIVILFIAWGIVLATGEITQLKTL
SKNNLIFLGLSGLATGLSWIFYFKAIETGNVSKVAPIDKLSVAIAMGLAFLILKEPIEAK
TLIGGGLIVAGSLVILL