Protein Info for CA265_RS09875 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: DUF480 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 216 transmembrane" amino acids 90 to 110 (21 residues), see Phobius details PF04337: DUF480" amino acids 10 to 158 (149 residues), 191.4 bits, see alignment E=4.8e-61

Best Hits

Swiss-Prot: 45% identical to Y3027_SHEPW: UPF0502 protein swp_3027 (swp_3027) from Shewanella piezotolerans (strain WP3 / JCM 13877)

KEGG orthology group: K09915, hypothetical protein (inferred from 58% identity to shg:Sph21_2203)

Predicted SEED Role

"Protein of unknown function YceH" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z4A3 at UniProt or InterPro

Protein Sequence (216 amino acids)

>CA265_RS09875 DUF480 domain-containing protein (Pedobacter sp. GW460-11-11-14-LB5)
MDNVKPLPDLSAEEQRVLGSLIEKSRTTPDYYPMTLNSLTAACNQKSSRNPVVNYDEETI
TLTLNQLKIKGLISTATGGSSRATKYKHNLAIVYPLVPSELAIICLLLLRGPLTPGEINS
NSGRLYEFESIEEVLEQLQKLSDEEPAFVKQLAKKAGQKEARFVHLLGEQAETTTEPETE
TIAVAQFDPTELENRIEKLELEIEELKELVNLLMDK