Protein Info for CA265_RS09725 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: tolB protein precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1062 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF04450: BSP" amino acids 130 to 195 (66 residues), 26.1 bits, see alignment 1.1e-09 PF07676: PD40" amino acids 297 to 319 (23 residues), 22.7 bits, see alignment (E = 1.2e-08) amino acids 350 to 379 (30 residues), 15.9 bits, see alignment (E = 1.6e-06) amino acids 436 to 464 (29 residues), 31.7 bits, see alignment (E = 1.6e-11) amino acids 505 to 525 (21 residues), 12.6 bits, see alignment (E = 1.7e-05)

Best Hits

Predicted SEED Role

"tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z4C2 at UniProt or InterPro

Protein Sequence (1062 amino acids)

>CA265_RS09725 tolB protein precursor (Pedobacter sp. GW460-11-11-14-LB5)
MKIGSTLLKRYSAVLLLLILSFSVKAQYFGQNKVRYKKLDFKVLQTPHFEIYYYIKNEKL
LKRFSQDAETWYKMHQEVFRDTFLKKNPIILYNNHPDFQQTTALNGEIGIGTGGVTEALK
NRVIMPVMELNSQTRHVLGHELVHAFQYHLLLEKDSISLENVGQTPLWMVEGMAEYLSIG
KKDAFTSMWMRDAMLNRDIPSLKDLTNSNKYFPYRYGQAFWTYIGSQYGDTTIVPLFKNT
AKYGYENAIRYTFGYDDKTLSGLWKNSIDAHYKPMLKADSSQIKITGTKIIDNKNAGNMN
VAPALSPDGKYLAFMSEKDLFGIDLFLADAKTGRIIRKLSSQISNGHIDDFNFIESAGAW
SPDSKQFAFSIFSQGKNQMMIINVSNGTTVSQTAMDQVQQFGNLTWSPNGKDVAFSGMVE
GQSDIFSYNLDTKTVTQITNDVYSDYAPSYSPDGKKLVFSSDRAAIQANVINAVLPINLA
VYDIASKTVSNLDVFPGANNLNAQFSSNSQNIYFLSNRDGFRNLYKYNFADNTVDQLTDY
FTGISGITEFSPAISVSTTDDIVYSYYRYQRYTLYNAKLSSFKAKRIGNQEENFDAAILP
PMENIGVNIINSNLNNFDRFEKTIADSMRTVPYKPKFRLDYLANSGVGVSTSRFGTGVSG
GIVGMFSDILGTNQIIANLSVNGEIYDFGGLVGYINQKSRINWGAAISHIPYVSGFRSYG
YENIPIGKNQAGVEQTINAFADRTDIIRTFEDQLQVFGAYPFSKIHRFELGGAFSHYSYR
IDRYSNYYDANGYYIRSDKNRISNDEASKTYEVPFNAFTLYQLNAGFIGDNSIFGLTGPL
DGYRYRVSGEKYFGTYNFAGVTADLRKYWRAKPVTFAVRSYNTLRIGKDADRLYPMYLGY
PYLIRGYESNSIYKSTSAQSSESFDINQLTGSKIAVFNFEVRLPFTGPKKLAAIPSKFLF
SDLNLFFDAGLAWTNDTRVKFKSEPTYTSEPLLDDNGVPVKDDKGNPVTYQATTERVPAM
SVGISLRVNVFGYFVLEPYYAIPFQRKDVKTGVFGLTFAPGW