Protein Info for CA265_RS09135 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 674 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF12836: HHH_3" amino acids 55 to 117 (63 residues), 37.6 bits, see alignment E=1e-13

Best Hits

KEGG orthology group: None (inferred from 53% identity to phe:Phep_2537)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZCM9 at UniProt or InterPro

Protein Sequence (674 amino acids)

>CA265_RS09135 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKIWYALLLVLFPYSLLAQNIQEADIRDILESVAENLPDDYDMTELVDVLEKYRKHPINL
NRTSVEELKTLVFLSPLQISNFFSHIKENGQLADVLELQSIKGFDIKTIQTLLPFVTLTN
IAEYQQLSFKNLMHDGGNDLMMRFAQTLQKQRGYTDLPGNRYLGSPERFQMRYRYQYSSI
LSAAITLDKDAGEKFIGKPFDFYSGNIALFKLGKLKKLVIGDYTLQFGQGLTLWSGFSFG
KGPDVTSVAKKDLGLRPYNSTNEYSFFRGSAATINLFKNIDLTPFVSFRNLDASQKLDSE
GNLVQATINQTGLHRTPTEIKNKGVLAQRIFGTTIQYTKNEFALGAIAYHTNYKTRFITQ
AAAYDQYSFTGTALTNLGLFYNYTYKNMYLYGEAAKGLGAGLAYINGVLISLSPTVSAAL
TYRDYAKDYHSFFNQAVSEASEAVNEKGLYAGLNVNPNKHWAFSFYGDYFRFPWLKYRID
EPSKGYEVLGQAVYTPSKIFKVLVRFKTERKQQNTDLDVPVNFLEYVKREGYRAEASWQL
NKNWRFQNRLEVSQYKKGSASREFGYLIYQDVDYSPMFAKLTGNVRFAYFNTPSYNSRIY
AYEDDVLYSFAFGMYSGTGFRTYFNLKYNVVKKLNVWVRYGLFVYKNVETVGTYLDEIDG
NKKSEVKIQVRYQF