Protein Info for CA265_RS08805 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: LacI family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 PF00356: LacI" amino acids 7 to 52 (46 residues), 37.4 bits, see alignment 3.6e-13 PF00532: Peripla_BP_1" amino acids 64 to 318 (255 residues), 97.6 bits, see alignment E=1.9e-31 PF13407: Peripla_BP_4" amino acids 66 to 312 (247 residues), 84.5 bits, see alignment E=1.8e-27 PF13377: Peripla_BP_3" amino acids 174 to 319 (146 residues), 64.7 bits, see alignment E=2.4e-21

Best Hits

KEGG orthology group: None (inferred from 64% identity to phe:Phep_2268)

Predicted SEED Role

"LacI family transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z437 at UniProt or InterPro

Protein Sequence (338 amino acids)

>CA265_RS08805 LacI family transcriptional regulator (Pedobacter sp. GW460-11-11-14-LB5)
MQSKPTTIKEIARILNISPSSVSRGLHDHPSIGAVTREKIKQLAKSLNYEPNNAAILFQK
GKTYTIGVILPELSEHFFSIAISAIEDEAIKKNYTVIFAQSHDNYEQEVKLVEKMKNQRV
DGLLVSISKDTSKFDHFEKLNSFNIPVVFFDRIPPFKNVHYVACSLESATVKAVNYLLKK
GHRSIGMINGPSTLYASEERKDGYMQAITFNRLKFDPSLVVNCDLTEEGTIDAAEQFLNH
KRKPTAIVAFNDYVALFLIKYFKKLNVINDFDVVSYANLPIISYLDNSPVASVEQYPYLQ
GQKAANILLDLIHSPNSENQAYYNTIVESDLIVNEVKE